Pinned Repositories
biggrExtra
metabolic pathway modeling based on gene expression
caretExtra
Tools for quality control, prediction and plotting for caret models
clustTools
Comprehensive dimensionality reduction and cluster analysis toolset
coxExtensions
Extended diagnostic and visualization tools for Cox proportional hazard models in R
CXCL-RCC
Analysis of role of CXCL9/10/11 and CXCR3 in renal cancer
DESeq
Skeleton of the legacy DESeq package: a patch for loading packages depending on it
fastTest
Fast Rcpp/C++ translations of popular statistical hypothesis tests in R
figur
figur: Smart Handling of Figures, Tables and Code in RMarkdown Documents
htGLMNET
High Throughput Light Weight Regularized Regression Modeling for Molecular Data
trafo
Transformation Toolset for Vectors, Matrices, Lists and Data Frames
PiotrTymoszuk's Repositories
PiotrTymoszuk/kmOptimizer
Tools for sample stratification based on survival differences
PiotrTymoszuk/analysis_tools
Tools for basic hypothesis-testing tasks (Chi, T, U, one-way ANOVA and Kruskal-Wallis test) and attractive result visualization
PiotrTymoszuk/celltrax
Enhanced graphics and analysis tools for the cell tracing analysis celltrackR package
PiotrTymoszuk/celltrax_analysis_app
Celltrax tracking data analysis app
PiotrTymoszuk/celltrax_preprocess_app
Celltrax pre-processing Shiny app for microscopy cell tracing data
PiotrTymoszuk/cluster_tools
A set of functions for hierarchical, k-means, PAM and DB scan clustering with R
PiotrTymoszuk/clustering-tools-2
An updated, comprehensive toolbox of component analysis and clustering tools based on base R and factoextra package functions
PiotrTymoszuk/counting-tools
A toolbox for basic two and more sample hypothesis testing
PiotrTymoszuk/cov-vaccination-post9
Analysis pipeline of the OWID data for the blog post 9
PiotrTymoszuk/covFacs
Immunophenotyping of blood myeloid leukocytes from healthy controls and COVID-19 patients
PiotrTymoszuk/CovILD-Plus
Analysis pipeline for the 12-month follow-up of the CovILD study
PiotrTymoszuk/COVILD-recovery-assessment-app
Code of the CovILD Pulmonary Assessment online Shiny App
PiotrTymoszuk/CovILD_6_Months
Complete analysis and visualization pipeline for the 6 month time point evaluation of the CovILD Study
PiotrTymoszuk/CXCR4-TCGA
PiotrTymoszuk/CXCR4-TCGA-analysis-pipeline
A complete PAAD TCGA cohort analysis pipeline for the paper by Kocher et al
PiotrTymoszuk/health-after-COVID19-analysis-pipeline
Revised R analysis pipeline for the preprint 'Phenotyping of acute and persistent COVID-19 features in the outpatient setting: exploratory analysis of an international cross-sectional online survey', DOI: 10.1101/2021.08.05.21261677
PiotrTymoszuk/kinet
Mixed-effect polynomial kinetic modeling
PiotrTymoszuk/kNN
k-nearest neighbor prediction for binary outcome and various distance measures
PiotrTymoszuk/lasso_tools
A medley of tools for LASSO-driven co-variate selection and generation of QC plots
PiotrTymoszuk/lm_qc_tools
Estimate extraction and diagnostic tools for R's lm and objects
PiotrTymoszuk/lmqc
A development package with tools for construction, quality control and optimization of linear and generalized linear models
PiotrTymoszuk/mental-health-after-COVID-19
Analysis pipeline of the study 'Mental Heath after COVID-19 in Tyrol'
PiotrTymoszuk/mentalCoV_dashboard
Source code for the Mantal Health after COVID-19 result dashboard
PiotrTymoszuk/omicron-post10
Analysis pipeline for the blog post 10
PiotrTymoszuk/PAH-tool-performance
Analysis pipeline for assessment of PAH risk performance at predicting overall survival in two academic centers in Austria
PiotrTymoszuk/PAH_Risk_Assessment_Tools
Source code for the PAH Risk Assessment tools
PiotrTymoszuk/radio_CovILD
Analysis pipeline of radiological outcomes of the 1-year post-COVID-19 follow-up in the CovILD study
PiotrTymoszuk/SOM_tools
A set of tools for construction and cross-validation of self-organizing maps
PiotrTymoszuk/timerTools
Management of a local TIMER 2.0 database
PiotrTymoszuk/traceR-tools
Development of QC wrappers for cell - cell pair statistics and doublet identification