PominovaMS/denovo_benchmarks

Issues

• Unable to run GCNovo locally

  #36 opened 2 months ago by BioGeek
  0

• Output file format not strictly enough defined.

  #33 opened 2 months ago by BioGeek
  3

• Unable to build biatNovo-DDA and DePS locally due to line `chmod 1777 /tmp`

  #32 opened 2 months ago by BioGeek
  0

• Benchmark cannot be run locally due to hardcoded paths

  #19 opened 2 months ago by BioGeek
  0

• Add reference proteomes and script for programmatic download

  #28 opened 3 months ago by BioGeek
  0

• dataset names in README, sample_data and results folders are out of date.

  #17 opened 3 months ago by BioGeek
  0

• Unable to build pi-HelixNovo image

  #24 opened 3 months ago by BioGeek
  0

• Unable to run pi-HelixNovo locally

  #26 opened 3 months ago by BioGeek
  1

• Unable to run DeepNovo locally

  #23 opened 3 months ago by BioGeek
  0

• Unable to run Casanovo non-tryptic model locally

  #22 opened 3 months ago by BioGeek
  0

• container creation failed: mount hook function failure: mount overlay->/usr/local/var/apptainer/mnt/session/final error: while mounting overlay: can't mount overlay filesystem to /usr/local/var/apptainer/mnt/session/final: invalid argument

  #12 opened 3 months ago by BioGeek
  1