Psy-Fer/interARTIC

Issues

• Command Failed: bcftools

  #75 opened 2 years ago by yeathian
  6

• FR: protein variants

  #74 opened 2 years ago by Psy-Fer
  0

• bed format error when testing on amplicon & ref on other viruses

  #71 opened 2 years ago by Krysasp
  2

• bed_file referenced before assignment

  #73 opened 2 years ago by Psy-Fer
  1

• sceheme download failed error in artic minion

  #72 opened 3 years ago by Psy-Fer
  1

• run wont start. output is in same directory as data

  #68 opened 3 years ago by omarkr8
  12

• interARTIC for aarch64 (Jetson Xavier NX)

  #48 opened 3 years ago by hanfan1803
  47

• Add option for min_depth

  #70 opened 3 years ago by omarkr8
  1

• Gupplyplex. illegal instruction, core dump

  #69 opened 3 years ago by omarkr8
  18

• Add barcode autodetect

  #67 opened 3 years ago by Psy-Fer
  0

• Nanopolish and 96 barcodes

  #66 opened 3 years ago by Psy-Fer
  0

• Progress bar needs to be fixed

  #57 opened 3 years ago by Psy-Fer
  0

• RB##.fastq not found error

  #65 opened 3 years ago by Psy-Fer
  0

• Problems with Fastq files in Subfolder

  #47 opened 3 years ago by AntonPembaur
  7

• Add artic v4 primers

  #56 opened 3 years ago by Psy-Fer
  3

• QC metric download buttons

  #62 opened 3 years ago by Psy-Fer
  2

• More QC metrics on output

  #60 opened 3 years ago by Psy-Fer
  4

• Output directory check enchancement to detects wrong FASTQ inference

  #46 opened 3 years ago by hasindu2008
  0

• fix input for single sample when compiling metadata for QC report

  #63 opened 3 years ago by Psy-Fer
  3

• delete and abort buttons on home no longer working

  #61 opened 3 years ago by Psy-Fer
  1

• macOS library's missing?

  #64 opened 3 years ago by Psy-Fer
  2

• utf-8 compatibility

  #55 opened 3 years ago by Psy-Fer
  3

• Add version info to web interface

  #51 opened 3 years ago by Psy-Fer
  6

• Can the abort button be hiddenor show something in green like success after all steps complete?

  #59 opened 3 years ago by hasindu2008
  3

• Matplotlib issue

  #49 opened 3 years ago by hasindu2008
  3

• Fix issues in run.sh scripts when the path contains spaces

  #34 opened 3 years ago by hasindu2008
  0

• Add html docs pages to app

  #52 opened 3 years ago by Psy-Fer
  4

• Step by step guide for custom schemes

  #53 opened 3 years ago by Psy-Fer
  0

• Button for "next" and "download all"

  #45 opened 3 years ago by hasindu2008
  5

• Missing jobs until manually refreshed

  #58 opened 3 years ago by hasindu2008
  1

• how to update?

  #54 opened 3 years ago by Psy-Fer
  1

• config file for custom schemes

  #50 opened 3 years ago by Psy-Fer
  0

• Video tutorial/demo

  #33 opened 3 years ago by Psy-Fer
  1

• After a job failed, rerunning option gives error

  #41 opened 3 years ago by hasindu2008
  1

• fasta download button

  #44 opened 3 years ago by Psy-Fer
  1

• FASTQ file location inferrence is wrong

  #40 opened 3 years ago by hasindu2008
  3

• Need to document (add tooltip) about the data directory structure

  #38 opened 3 years ago by hasindu2008
  2

• Nanopolish pipeline does not work if sequencing summary file is not there

  #39 opened 3 years ago by hasindu2008
  1

• Custom primer scheme name

  #42 opened 3 years ago by Psy-Fer
  1

• Cleanup static/tmp_plots

  #31 opened 3 years ago by Psy-Fer
  0

• Custom primer bug with primer type == None

  #43 opened 3 years ago by Psy-Fer
  1

• SIngle sample no longer works

  #37 opened 3 years ago by hasindu2008
  0

• Barcode format check in CSV

  #35 opened 3 years ago by hasindu2008
  0

• When a error occurs, the job list on the home page becomes empty

  #36 opened 3 years ago by hasindu2008
  0

• Update about page

  #29 opened 3 years ago by Psy-Fer
  0

• A clear error message if the user has not set the input data locations

  #30 opened 3 years ago by hasindu2008
  1

• Add plots to output page

  #27 opened 3 years ago by Psy-Fer
  1

• Re-organise output page

  #28 opened 3 years ago by Psy-Fer
  2

• Add model selection for medaka to allow use with promethion flowcells

  #32 opened 3 years ago by Psy-Fer
  0

• update tooltips

  #26 opened 3 years ago by Psy-Fer
  1