Quantitative Image Informatics for Cancer Research

QIICR was a research project supported by the NIH National Cancer Institute ITCR program, award U24 CA180918, in 2013-2019

Pinned Repositories

atom-dicom-dump
Atom editor package for examining the content of DICOM files
Language:CoffeeScript5 4 81
dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
Language:C++234 14 23162
lidc2dicom
Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.
Language:Jupyter Notebook25 4 712
PETTumorSegmentation
3D Slicer Extension for PETTumorSegmentation
Language:C++14 3 1010
ProjectIssuesAndWiki
Project to keep track of overall progress and milestones of QIICR
9 28 183
QIN-PROSTATE-Repeatability-Radiomics
Language:Jupyter Notebook15 2 111
QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
Language:Python22 12 16523
Slicer-PETDICOMExtension
3D Slicer extension containing tools for importing DICOM PET series
Language:C++17 3 1111
SlicerDevelopmentToolbox
API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.
Language:Python7 5 87
TCIABrowser
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
Language:Python18 3 349

Quantitative Image Informatics for Cancer Research's Repositories

QIICR/dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
Language:C++234 14 23162
QIICR/lidc2dicom
Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.
Language:Jupyter Notebook25 4 712
QIICR/QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
Language:Python22 12 16523
QIICR/TCIABrowser
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
Language:Python18 3 349
QIICR/Slicer-PETDICOMExtension
3D Slicer extension containing tools for importing DICOM PET series
Language:C++17 3 1111
QIICR/QIN-PROSTATE-Repeatability-Radiomics
Language:Jupyter Notebook15 2 111
QIICR/PETTumorSegmentation
3D Slicer Extension for PETTumorSegmentation
Language:C++14 3 1010
QIICR/SlicerDevelopmentToolbox
API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.
Language:Python7 5 87
QIICR/dicom3tools
This is an UN-OFFICIAL repository of the dicom3tools library by David Clunie. Official location: http://www.dclunie.com/dicom3tools/workinprogress/. Tags correspond to snapshots of the source code published at the original location.
Language:Smarty6 3 13
QIICR/DSC_Analysis
Analysis of Dynamic Susceptibility Contrast (DSC) MRI
Language:C++6 7 25
QIICR/atom-dicom-dump
Atom editor package for examining the content of DICOM files
Language:CoffeeScript5 4 81
QIICR/dicom4miccai-handson
Supporting materials for the MICCAI 2017 DICOM tutorial. See accompanying documentation at https://qiicr.gitbook.io/dicom4miccai-handson/
Language:Jupyter Notebook5 3 12
QIICR/DICOM4QI
DICOM4QI is an open demonstration and connectathon with the purpose of promoting and improving the use of DICOM for exchanging the quantitative image analysis results
4 5 710
QIICR/LongitudinalPETCT
Longitudinal PET/CT Analysis Module for Slicer 4
Language:C++4 24 84
QIICR/dcm2tables
Language:Python3 2 43
QIICR/dcmqi-guide
Learning materials for https://github.com/qiicr/dcmqi
Language:JavaScript3 3 22
QIICR/pydcmqi
Easy access Python wrapper of the DCMQI library
Language:Python3 1 0
QIICR/PkModeling
Slicer Extension providing pharmacokinetic modeling
Language:C++2 5 54
QIICR/dicom4miccai
Web site for the DICOM4MICCAI tutorial at the MICCAI conference (2017 and 2018)
Language:HTML1 3 02
QIICR/qiicr.github.io
Web site for QIICR at http://qiicr.org
Language:JavaScript1 3 03
QIICR/SlicerGCPSetup
1 2 4
QIICR/T1Mapping
T1 mapping estimates effective tissue parameter maps (T1) from multi-spectral FLASH MRI scans with different flip angles.
Language:C++1 2 02
QIICR/dcmtk-dcmqi
This is a version of DCMTK that is customized for dcmqi CI (see dcmqi branch)
Language:C++0 7 03
QIICR/CI4CC-Spring2016-ASW
Web site for the Academic Technology Development in Cancer Research workshop at CI4CC Spring 2016 Symposium
Language:HTML3 0
QIICR/ITK-dcmqi
This is a customized version of ITK to support dcmqi CI. It was manually and ugly stripped down to reduce build time and make continuous integration feasible.
Language:C++2 0
QIICR/PET-IndiC
UIowa QIN PET volume indices measurement tool for 3D Slicer
Language:Python23 51
QIICR/PETLiverUptakeMeasurement
3D Slicer Extension for measurement of liver uptake in PET scans
Language:C++4 01
QIICR/SlicerLayoutButtons
Language:Python2 12
QIICR/SlicerPETPhantomAnalysis
3D Slicer Extension for Analysis of Uniform Cylinder Phantom PET scans
Language:C++4 02
QIICR/zlib-dcmqi
This is a version of zlib that is customized for dcmqi CI (see dcmqi branch)
Language:C2 0