Quantitative Image Informatics for Cancer Research
QIICR was a research project supported by the NIH National Cancer Institute ITCR program, award U24 CA180918, in 2013-2019
Pinned Repositories
atom-dicom-dump
Atom editor package for examining the content of DICOM files
dcmqi
dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
lidc2dicom
Scripts for converting TCIA LIDC-IDRI collection derived data into standard DICOM representation from project-specific XML format.
PETTumorSegmentation
3D Slicer Extension for PETTumorSegmentation
ProjectIssuesAndWiki
Project to keep track of overall progress and milestones of QIICR
QIN-PROSTATE-Repeatability-Radiomics
QuantitativeReporting
Segmentation-based measurements with DICOM import and export of the results.
Slicer-PETDICOMExtension
3D Slicer extension containing tools for importing DICOM PET series
SlicerDevelopmentToolbox
API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.
TCIABrowser
3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).
Quantitative Image Informatics for Cancer Research's Repositories
QIICR/ProjectIssuesAndWiki
Project to keep track of overall progress and milestones of QIICR
QIICR/Iowa2DICOM
Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.
QIICR/dsr2csv
XSLT transformation of DICOM SR TID 1500 measurments into CSV table
QIICR/DICOMSearch
A utility to create a searchable index of the DICOM standard into a searchable database with web app
QIICR/dcmheat
QIICR/DICOMAnnotations
DICOMAnnotation extension for 3D Slicer.
QIICR/qiicr.github.io-legacy
Web page for QIICR
QIICR/Slicer-SUVFactorCalculator
3D Slicer CLI module to calculate Standardized Uptake Value conversion factors from DICOM
QIICR/IowaHNClinicalDataDICOMSRConversion
XSLT scripts developed by David Clunie to enable conversion of tab-delimited text files into DICOM SR to support encoding of the Iowa QIICR use case
QIICR/ci-sandbox
My sandbox for experimenting with CI services
QIICR/ci4cc-informatics-resources
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
QIICR/couchSite
Simple script to put html apps into a couchdb (even simpler than couchapp, which has been discontinued)
QIICR/dcmiodlang
dcmiodlang is the implementation of a custom DICOM information object definition language (IODL) and a compatible transformation language, the information object definition [transformation] skeleton language (IODSKEL).
QIICR/dcmqi-faq
Frequently Asked Questions for http://github.com/qiicr/dcmqi
QIICR/dicom4miccai-old
Web site content for MICCAI 2017 DICOM4MICCAI tutorial at http://qiicr.org/dicom4miccai/
QIICR/docker-dcmtk-cli
Repository to keep Dockerfiles for automated Docker builds of DCMTK
QIICR/ExtensionsIndex
Slicer extensions index
QIICR/pydicom
Read, modify and write DICOM files with python code
QIICR/qiicr-chart
experiments with charting of qiicr datasets
QIICR/QuantitativeReporting-guide
Learning materials for https://github.com/QIICR/QuantitativeReporting
QIICR/Slicer-QuantitativeIndicesExt
NOTICE! The Quantitative Indices Extension has moved to https://github.com/QIICR/PET-IndiC
QIICR/SlicerOpenCV
Slicer Extension wrapping OpenCV
QIICR/SR-sandbox