r2dt-bio/R2DT

Issues

• Display posterior probabilities as a measure of confidence

  #54 opened a year ago
  14

• Make R2DT command line tool available as Bioconda package

  #53 opened 3 years ago
  2

• Adding templates for visualization of ITS2 secondary structures for evolutionary comparison

  #52 opened 3 years ago
  23

• Add version and/or date info to README and or .py files

  #51 opened 3 years ago
  0

• Add method to determine the quality of a diagram

  #50 opened 3 years ago
  0

• Identify and resolve performance bottlenecks

  #49 opened 22 days ago
  0

• Add a flag to run additional folding using consensus model structure as a constraint

  #48 opened 2 years ago
  1

• Add FAIL and NO_HIT to metadata.tsv

  #47 opened 3 years ago
  1

• Add an advanced option to provide an alignment between sequence and template

  #43 opened 3 years ago
  0

• Create template for truncated RNAse P (RF02357)

  #42 opened a year ago
  0

• Add json 2D output type

  #41 opened 3 years ago
  1

• Create templates for 5S RNAs with expansion segments

  #40 opened 4 years ago
  1

• Adding RNAse P and MRP templates

  #39 opened a year ago
  0

• Use RNArtist instead of R2R to avoid overlaps in Rfam templates

  #38 opened 4 years ago
  4

• Verify that all CRW fasta files match the PS files

  #36 opened 4 years ago
  0

• Improve metadata file when there is no SVG

  #35 opened 4 years ago
  0

• Create new output type showing which template was selected

  #33 opened 4 years ago
  0

• Document how to add templates

  #32 opened 4 years ago
  1

• Color 2D by cmscan posterior probability

  #31 opened 2 years ago
  2

• Input validation - check that it's FASTA

  #30 opened 4 years ago
  0

• Consider applications for RNA virus visualisations

  #25 opened 4 years ago
  1

• Check why CRW Thermus SSU template is not in the template library

  #24 opened 2 years ago
  1

• Handle fragments better

  #23 opened 5 years ago
  2

• Exclude NC pairs

  #20 opened 5 years ago
  1

• Use general tRNA templates for pseudogenes and Sup/Undet hits

  #19 opened 5 years ago
  1

• Add correct family and domain to modelinfo

  #16 opened 5 years ago
  0

• Add 3D-based SSU templates

  #15 opened 4 years ago
  1

• Clean up CRW templates

  #14 opened 5 years ago
  1

• Streamline auto-traveler command options

  #13 opened 5 years ago
  0

• Set all paths in one place

  #12 opened 5 years ago
  0

• Add tests

  #11 opened 5 years ago
  0

• Add single entry point for 2D visualisation

  #10 opened 5 years ago
  0

• Automatic Docker image building

  #8 opened 5 years ago
  1

• Python 3 instead of python 2

  #7 opened 5 years ago
  1

• unable to install

  #6 opened 5 years ago
  4

• Add support for pseudoknot visualisation

  #4 opened a year ago
  3