Pinned Repositories
mediKanren
Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
owltools
OWLTools
PloverDB
result-merging
TRAPI Response merging
robot
ROBOT is an OBO Tool
RTX
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
ScoringAnalysis
Code to parse ARS results dump and extract ARA scores
translator-testing-framework
A testing framework for Translator using tests written in Behave
xDTD_training_pipeline
This repo is created for hosting a pipeline for automatically training xDTD model.
Development team for the RTX biomedical reasoning tool's Repositories
RTXteam/RTX-KG2
Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
RTXteam/RTX
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
RTXteam/PloverDB
RTXteam/xDTD_training_pipeline
This repo is created for hosting a pipeline for automatically training xDTD model.
RTXteam/d2s-docs
📖 Home for the Data2Services project documentation
RTXteam/kgx
Knowledge Graph Exchange tools for BioLink model-compliant graphs
RTXteam/mediKanren
Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
RTXteam/NL2TRAPI
A prototype investigation of converting natural language questions to the TRAPI format
RTXteam/owltools
OWLTools
RTXteam/result-merging
TRAPI Response merging
RTXteam/robot
ROBOT is an OBO Tool
RTXteam/ScoringAnalysis
Code to parse ARS results dump and extract ARA scores
RTXteam/translator-developer-documentation
Official Developer Documentation repository for the Biomedical Data Translator: https://translator-developer-documentation.readthedocs.io/en/latest/
RTXteam/translator-lfs-artifacts
NCATS Biomedical Data Translator repository for shared, large file access
RTXteam/translator-testing-framework
A testing framework for Translator using tests written in Behave
RTXteam/umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
RTXteam/DrugConflator
Tool to find the "essential drug" corresponding to any biolink:ChemicalEntity