Issues
- 18
- 0
incorrect subclass-of edge in KG2.9.0pre
#377 opened by saramsey - 2
- 2
Error in Reactome Conversion
#371 opened by acevedol - 6
Build KG2.9.1
#375 opened by acevedol - 1
Adjust table name `Regulation_2_summation` to `Event_2_summation` for `reactome_mysql_to_kg_json.py` (extension of #297)
#362 opened by d33bs - 0
- 7
knowledge_level on all edges?
#358 opened by edeutsch - 0
Compliance with Biolink 4.1.1 - Treats Refactor
#373 opened by acevedol - 0
- 1
Error in DGIdb Conversion
#370 opened by acevedol - 3
Free text info from DrugBank
#369 opened by dkoslicki - 22
Inverted UMLS (NCIT) Edge
#356 opened by acevedol - 0
Error in rule Ontologies_Conversion
#368 opened by acevedol - 0
Single Exon node with the name `Exon`
#367 opened by dkoslicki - 2
Add retry capabilities for `kg2_util.download_file_if_not_exist_locally` to avoid systemic failures
#365 opened by d33bs - 2
Add data description and provenance for "SMPDB PubMed annotations" (`SMPDB_pubmed_IDs.csv`)
#366 opened by d33bs - 0
Look into PathWhiz scripts to make sure there are proper links back to SMPDB pathways
#363 opened by saramsey - 1
Bazillion Cardiolipin Biosynthesis pathways
#361 opened by dkoslicki - 5
Error in Ontologies_Conversion
#360 opened by acevedol - 2
strange subclass_of edge in KG2.8.1pre
#357 opened by saramsey - 1
- 0
biolink-model 4.0.0 will move the location of the biolink-model.owl.ttl file into a subdirectory and will have a name change (dashes to underscores)
#355 opened by sierra-moxon - 2
Build KG2.8.6
#349 opened by ecwood - 0
complete KG2.8.6pre record in kg2-versions.md
#352 opened by saramsey - 1
Broken links in RTX-KG2 results
#346 opened by dkoslicki - 2
Improve File Name Standardization
#332 opened by ecwood - 2
SMPDB Has Lots of Duplicate Nodes
#337 opened by ecwood - 2
Should we have statement qualifiers on certain edges?
#350 opened by ecwood - 2
UniProtKB shouldn't have KB in the CURIE prefix?
#348 opened by dkoslicki - 0
Consider ETLing WikiPathways and SIDER
#347 opened by ecwood - 4
KG2 Validation issue
#345 opened by edeutsch - 0
Improve Code Documentation/Comments
#333 opened by ecwood - 2
Why didn't we get UMLS:C0572088 with CHV?
#344 opened by saramsey - 5
- 2
Address `biolink:OrganismalEntity` in KG2
#324 opened by ecwood - 7
`setup-kg2-build.sh` Fails to Install `pip`
#327 opened by ecwood - 4
DisGeNet edge with empty PMID
#325 opened by saramsey - 1
Source Predicates Missing From YAML Config File
#330 opened by ecwood - 2
Issue with `ordo.owl` URL
#343 opened by ecwood - 2
- 0
Failure in `setup-python37-with-pip3-in-ubuntu.shinc`
#341 opened by ecwood - 2
DRUGBANK:drug-interaction is incorrectly being mapped to biolink:physically_interacts_with
#340 opened by saramsey - 0
- 0
DGIdb Extraction Tends to Fail
#335 opened by ecwood - 1
miRBase URL Change
#329 opened by ecwood - 3
Issue in `Simplify` During `KG2.8.4pre` Build
#328 opened by ecwood - 1
Address `biolink:InformationContentEntity` in KG2
#326 opened by ecwood - 0
Consider Removing Deprecated Code from Repository
#323 opened by ecwood - 0
KG2 README is Out of Date
#322 opened by ecwood