Pinned Repositories
FourierTools.jl
Tools for working with Fourier space.
IndexFunArrays.jl
Fun with indices (and functions on them)
UC2-GIT
Respository for Open-Science modular microscope system.
CudaMat
CudaMat enables fast computing on graphics cards that supports the CUDA programming language. Currently such cards are available from NVidia. CudaMat is, as much as possible, invisible to the user. The idea is that the user can transform any existing Matlab code into a CudaMat code with minimal effort. E.g. with a single line like a=cuda(a) the Matlab object 'a' gets transformed into a CudaMat object 'a'. This can be checked using the matlab command whos.
FindShift.jl
Julia functions for aligning data, finding and optimizing peaks in Fourier space and alike.
OrthoView.jl
PointSpreadFunctions.jl
Toolbox for calculating optical PSFs
StateModeling
a toolbox for modeling states and transition rates between them and fitting initial distributions, rates and alike using tensorflow
StructuredIlluminationMicroscopy.jl
View5D.jl
5 dimensional viewer support in Julia
RainerHeintzmann's Repositories
RainerHeintzmann/PointSpreadFunctions.jl
Toolbox for calculating optical PSFs
RainerHeintzmann/View5D.jl
5 dimensional viewer support in Julia
RainerHeintzmann/StateModeling
a toolbox for modeling states and transition rates between them and fitting initial distributions, rates and alike using tensorflow
RainerHeintzmann/CudaMat
CudaMat enables fast computing on graphics cards that supports the CUDA programming language. Currently such cards are available from NVidia. CudaMat is, as much as possible, invisible to the user. The idea is that the user can transform any existing Matlab code into a CudaMat code with minimal effort. E.g. with a single line like a=cuda(a) the Matlab object 'a' gets transformed into a CudaMat object 'a'. This can be checked using the matlab command whos.
RainerHeintzmann/FindShift.jl
Julia functions for aligning data, finding and optimizing peaks in Fourier space and alike.
RainerHeintzmann/StructuredIlluminationMicroscopy.jl
RainerHeintzmann/OrthoView.jl
RainerHeintzmann/DataToFunctions.jl
Represents (measured) data as a function, which supports scaling and shifting. It is intended to be used as a tool for fitting data, where the fitting function is given by measured data.
RainerHeintzmann/EvalMultiPoly.jl
Evaluates a multivariate polynomial of defined order and number of variables attempting minimal memory consumption.
RainerHeintzmann/ShiftedArrays.jl
Lazy shifted arrays for data analysis in Julia
RainerHeintzmann/B-SIM
Physically Accurate Structured Illumination Microscopy Reconstruction
RainerHeintzmann/BioformatsLoader.jl
A julia package to load images using bioformats
RainerHeintzmann/ChainRules.jl
forward and reverse mode automatic differentiation primitives for Julia Base + StdLibs
RainerHeintzmann/chromatix
Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io
RainerHeintzmann/CUDA.jl
CUDA programming in Julia.
RainerHeintzmann/Deconv
RainerHeintzmann/DeconvOptim.jl
A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.
RainerHeintzmann/ImSwitchUC2
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
RainerHeintzmann/IntegralArrays.jl
Julia Implementation of Integral Arrays
RainerHeintzmann/InverseModeling.jl
RainerHeintzmann/IPHTNyquist
A Javascript app to calculate Nyquist sampling
RainerHeintzmann/JAC.jl
Jena Atomic Calculator
RainerHeintzmann/Khoros
RainerHeintzmann/Makie.jl
High level plotting on the GPU.
RainerHeintzmann/Recipes
An app hosting recipes to be processed by the user
RainerHeintzmann/RegistrationNuFFT.jl
Registers images based on the non-uniform FFT which enables user-defined (arbitrary) coordinate transforms.
RainerHeintzmann/TestImages.jl
commonly used test images
RainerHeintzmann/ThinPlateSplines.jl
Thin-plate splines in Julia
RainerHeintzmann/TimeTags.jl
reads Picoquant .ptu files and converts them into time-tag vectors or FLIM images
RainerHeintzmann/UNet.jl
Generic UNet implementation written in pure Julia, based on Flux.jl