Pinned Repositories
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
FastSL
A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models
FastSL-py
Python implementation of FastSL
iCOMIC
metquest
Enumerating biosynthetic pathways in metabolic networks
metquest2
Enumerating biosynthetic pathways in metabolic networks
nbfpeg
PIVOT
ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.
SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
Raman Lab, IIT Madras's Repositories
RamanLab/metquest
Enumerating biosynthetic pathways in metabolic networks
RamanLab/metquest2
Enumerating biosynthetic pathways in metabolic networks
RamanLab/iCOMIC
RamanLab/minMicrobiome
Code for generation of Minimal Microbiomes using a constraint-based approach
RamanLab/PIVOT
RamanLab/SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
RamanLab/CAMP
RamanLab/co-FSEOF
RamanLab/fbc_curation_matlab
fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.
RamanLab/cTaG
RamanLab/minRerouting
Package to understand the compensatory mechanisms performing similar metabolic functions through analysis of Synthetic Lethals
RamanLab/NBDriver
Codes required to reproduce the results from the NBDriver manuscript
RamanLab/NonLinearAdaptation
This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfect Adaptation]{Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics'
RamanLab/picCASO
picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a microbial consortium on a 2-dimensional surface.
RamanLab/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
RamanLab/FastSL-py
Python implementation of FastSL
RamanLab/CASTLE
RamanLab/COWAVE
COVID-19 Wave dataset, based on WHO dataset and labelled as waves based on a new definition.
RamanLab/DNA-Computing-for-the-Subset-Sum-Problem
This repository contains the code I wrote for my undergraduate research project on 'DNA-based computing for the Subset Product Problem', done at IIT Madras.
RamanLab/iCOMIC_doc
iCOMIC is an open source genomic data analysis tool characterized by a user friendly GUI. It integrates many independent core workflows for Whole Genome/Exome Sequencing and RNA-Seq data analysis.
RamanLab/IdentifyTSGOG
RamanLab/ISS_Enterobacter
RamanLab/Metabolic-Modelling-of-the-ISS-Microbiome
Created on 2020-11-04 to maintain versions of the project from this time point onwards.
RamanLab/Neobacillus
Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus
RamanLab/Panera
MATLAB repository to construct pan-genus metabolic models (PGMM)
RamanLab/phoenix-novel-species
RamanLab/Robust-Adaptation
RamanLab/structure-based-drug-design
Structure based Drug Design using Distance prediction with Graph Neural Networks - Dual Degree Project
RamanLab/SysBioBook
RamanLab/SystemsTheoryAdaptation