Pinned Repositories
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox
FastSL
A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models
FastSL-py
Python implementation of FastSL
iCOMIC
metquest
Enumerating biosynthetic pathways in metabolic networks
metquest2
Enumerating biosynthetic pathways in metabolic networks
nbfpeg
PIVOT
ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.
SysBioBook-codes
This repository contains companion codes, developed for use with the CRC Press Book "An Introduction to Systems Biology" by Karthik Raman
Raman Lab, IIT Madras's Repositories
RamanLab/ReactionMiner
Tool to predict (bio)chemical reactions using graph mining.
RamanLab/FastSL
A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models
RamanLab/nbfpeg
RamanLab/MinReact
RamanLab/comm-synleth-virgo
Repository for running FastSL on the community models of Human gut microbes on the Virgo cluster at IIT Madras.
RamanLab/ComPass
A tool to predict sub-networks from metabolic networks
RamanLab/DiseaseModuleIdentification
RamanLab/MetQuest-old
Enumeration of biosynthetic pathways from metabolic networks
RamanLab/ramanlab.github.io-OLD
ramanlab.github.io
RamanLab/CASTLE-v0
Computational Analysis of SynThetic LEthals
RamanLab/CASTLE_new
RamanLab/Curated-Bifidobacterial-GSM
Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models
RamanLab/Curated-Bifidobacterial-GSM-1
Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models
RamanLab/GutRecoveryMetabolicNets
Companion repository for manuscript on "Unraveling microbial interactions in the gut microbiome associated with antibiotic recovery"
RamanLab/NetGenes
dummy repo for redirects
RamanLab/ramanlab-academic