Rappsilber Laboratory

Our mission is to develop approaches to study protein structure and interactions in cells and make them universally accessible and useful.

Edinburgh / Berlin

Pinned Repositories

AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
Language:Python52 5 3516
build-xiview
Language:JavaScript2 8 1050
ProteomeHD
R scripts and data related to the manuscript "Co-regulation map of the human proteome enables identification of protein functions" by Kustatscher et al (https://www.nature.com/articles/s41587-019-0298-5)
Language:R8 8 00
treeClust-benchmarking
R scripts for the treeClust benchmarking aspect in our manuscript "Co-regulation map of the human proteome enables identification of protein functions" by Kustatscher et al (https://www.nature.com/articles/s41587-019-0298-5)
Language:R3 7 01
xiDOUBLET
Language:Python3 5 00
xiFDR
Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs
Language:Java5 4 252
xiRT
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
Language:Python8 3 52
XiSearch
XiSearch
Language:Java9 8 637
xiSPEC_website
Language:JavaScript3 7 161
xiview
Language:JavaScript4 3 501

Rappsilber Laboratory's Repositories

Rappsilber-Laboratory/AlphaLink2
AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
Language:Python52 5 3516
Rappsilber-Laboratory/XiSearch
XiSearch
Language:Java9 8 637
Rappsilber-Laboratory/xiRT
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
Language:Python8 3 52
Rappsilber-Laboratory/xiFDR
Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs
Language:Java5 4 252
Rappsilber-Laboratory/xiview
Language:JavaScript4 3 501
Rappsilber-Laboratory/xiDOUBLET
Language:Python3 5 00
Rappsilber-Laboratory/xiSPEC_website
Language:JavaScript3 7 161
Rappsilber-Laboratory/build-xiview
Language:JavaScript2 8 1050
Rappsilber-Laboratory/xi-mzidentml-converter
Language:Python2 6 102
Rappsilber-Laboratory/preprocessing
Language:Python1 7 04
Rappsilber-Laboratory/xiDIA-library
Language:Python1 8 01
Rappsilber-Laboratory/xiSPEC_spectrumViewer
Language:JavaScript1 4 171
Rappsilber-Laboratory/xiview-server
Language:HTML0 1 12
Rappsilber-Laboratory/_xiFDR_-Wrapper
Language:Python7 0
Rappsilber-Laboratory/Alphafold-analysis
scripts to visualise results of alphafold and alphafold multimer runs
Language:Python1 0
Rappsilber-Laboratory/CLMS-model
Language:JavaScript3 0
Rappsilber-Laboratory/ComplexViewer
web based visualisation of molecular interaction data
Language:JavaScript7 0
Rappsilber-Laboratory/crosslink-viewer
web based visualisation of CLMS data
Language:JavaScript1
Rappsilber-Laboratory/history
history page
Language:JavaScript5 02
Rappsilber-Laboratory/progulons_v2
R scripts and input files for the manuscript "Higher-order modular regulation of the human proteome"
Language:R4 0
Rappsilber-Laboratory/pyXiAnnotator
Language:Python8 02
Rappsilber-Laboratory/searchSubmit
Language:JavaScript3 41
Rappsilber-Laboratory/userGUI
Interface for user admin management
Language:JavaScript5 01
Rappsilber-Laboratory/vendor
javascript libs used by xi interface
Language:JavaScript7 01
Rappsilber-Laboratory/xiAnnotator
Spectrum annotator using xi
Language:Java2
Rappsilber-Laboratory/xidocs
Online documentation for xiview and associated pages
Language:HTML6 11
Rappsilber-Laboratory/xiFAIMS
Analysis of CLMS FAIMS Data
Language:Jupyter Notebook5 01
Rappsilber-Laboratory/XiLauncher
A small application used to launch searches that are pending in the database
Language:Java6 01
Rappsilber-Laboratory/xiUtilities
Language:Python
Rappsilber-Laboratory/xiview-api
xiview-api provides REST endpoints to access crosslinking resources in PRIDE
Language:Python1 01