RareSeas

2017-dibsi-metagenomics

2017 DIBSI Metagenomics Workshop

2017-dsi-docker-may

2017-ucsc-metagenomics

Workshop materials for shotgun metagenomics

academic-keyword-occurrence

Extracts the historic word occurrence of a search term in academic papers

Adaptive-pathways-of-coral-populations-on-the-Great-Barrier-Reef

processed data and scripts to accompany the same-title paper

angsd

Program for analysing NGS data.

angsd-wrapper

A project for extending ANGSD

bacteria-archaea-traits

A synthesis of bacterial and archaeal phenotypic trait data

GIGAIII_bioinformatics_workshop

Tutorial materials for GIGA III bioinformatics workshop, Curaçao 19-21 October 2018

RareSeas/Pathway-Analysis-Tutorial

RareSeas/pyjip

JIP Pipeline System

RareSeas/refFinder

Program/lib to extract bases from positions in fastafiles

RareSeas/angsd-wrapper

A project for extending ANGSD

RareSeas/rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

RareSeas/maf2fasta

Program to generate fasta from maf files (multiple alignment files)

RareSeas/SKAT_NGS-2015

RareSeas/smilefinder

RareSeas/shell-novice

Clone of Software Carpentry introduction to the shell for novices.

RareSeas/POLiMAPS

Perl scripts for analyzing polyploid DNA sequence data

RareSeas/khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

RareSeas/sphinx-tutorial

Exercises for the Sphinx Tutorial that I often give at PyCon

RareSeas/rsted

Online reStructuredText editor

RareSeas/Sphinx-doc---rst

This is an rst file that you can use with Sphinx and pdflatex to include a bulleted list and image. The index file template is included and the output.

RareSeas/shared_scripts

RareSeas/bioinformatics