What are the criteria of RF model

Question

What are the criteria of RF model

ChaoXianSen opened this issue a year ago · 2 comments

Hi ！
What score, or threshold of RF model is used to classify bacteria from viruses?

thanks!

Answer 1 · 2023-10-09T15:20:14.000Z

Hi Chao

The RF model has been trained as described in the paper - by default the code do not filter on an arbritary cutoff or threshold but utilise the label-prediction of the model.

Best,
Joachim

Answer 2 · 2023-10-09T15:22:39.000Z

But this then probably means that 50 percent of the trees need to predict the contig as virus?