RhettRautsaw

Bioinformatics

This repository contains many simple, but potentially useful bioinformatics scripts as well as functions and resources for improving your skillset and performing really cool analyses.

CoordinateMapper

Shiny app to quickly plot latitude/longitude points via copy-paste from spreadsheet.

GIS_Tutorial

The basics of GIS, qGIS, and R with tips, tricks, and resources

MitoSIS

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

PhyProbe

PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).

SequencingEstimator

This Shiny App is designed to help you estimate sequencing needs and costs on various platforms.

StJude_PacBio-WDL-tutorial

TransMap

TransMap is an analysis pipeline for cross-species comparative transcriptome expression analyses.

VariantCaller

VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.

VenomMaps

Distribution maps and niche models for venomous snakes.

RhettRautsaw/VenomMaps

Distribution maps and niche models for venomous snakes.

RhettRautsaw/Bioinformatics

This repository contains many simple, but potentially useful bioinformatics scripts as well as functions and resources for improving your skillset and performing really cool analyses.

RhettRautsaw/TransMap

TransMap is an analysis pipeline for cross-species comparative transcriptome expression analyses.

RhettRautsaw/MitoSIS

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

RhettRautsaw/VariantCaller

VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.

RhettRautsaw/CoordinateMapper

Shiny app to quickly plot latitude/longitude points via copy-paste from spreadsheet.

RhettRautsaw/SequencingEstimator

This Shiny App is designed to help you estimate sequencing needs and costs on various platforms.

RhettRautsaw/StJude_PacBio-WDL-tutorial

RhettRautsaw/PhyProbe

PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).

RhettRautsaw/ShinyServer

Shiny Server on Digital Ocean Droplet (RhettRautsaw.app)

RhettRautsaw/ChimeraKiller

In-development script for identifying chimeric transcripts in a de novo assembled transcriptome

RhettRautsaw/GIS_Tutorial

The basics of GIS, qGIS, and R with tips, tricks, and resources

RhettRautsaw/humboldt

Welcome to the offical webpage for the R-package ‘humboldt’

RhettRautsaw/App1

RhettRautsaw/App2

RhettRautsaw/kuenm

kuenm: An R package for detailed calibration and construction of Maxent Ecological Niche Models.

RhettRautsaw/LabProtocols

A repository of lab techniques and protocols.

RhettRautsaw/MITGARD

Mitochondrial Genome Assembly

RhettRautsaw/pyVAE

Dataframe dimensionality reduction with a VAE

RhettRautsaw/QTIBAC

QMS-based Transcript Identification, Blast, Annotation, and Confirmation

RhettRautsaw/RhettRautsaw

RhettRautsaw GitHub ✨special ✨ repository, personal website, and CV

RhettRautsaw/rhettrautsaw.github.io

RhettRautsaw/ToxCodAn

Toxin genes annotation in venom gland transcriptome assembly

RhettRautsaw/Walter

Collection of tools for the analysis of CpG data

RhettRautsaw/Website_Jekyll

Testing creating a jekyll website