Pinned Repositories
2018_Bacterial_Pipeline_riboseq
Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.
bioconda-recipes
Conda recipes for the bioconda channel.
DeepRibo
deepribo_image
singularity image for deepribo
figure-dump
HRIBO
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
HRIBO_ReadTheDocs
ReadTheDocs documentation for HRIBO
REPARATION_blast
RiboReport
uORF-Tools_ReadTheDocs
RickGelhausen's Repositories
RickGelhausen/HRIBO
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
RickGelhausen/HRIBO_ReadTheDocs
ReadTheDocs documentation for HRIBO
RickGelhausen/RiboReport
RickGelhausen/uORF-Tools_ReadTheDocs
RickGelhausen/REPARATION_blast
RickGelhausen/2018_Bacterial_Pipeline_riboseq
Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.
RickGelhausen/bioconda-recipes
Conda recipes for the bioconda channel.
RickGelhausen/DeepRibo
RickGelhausen/deepribo_image
singularity image for deepribo
RickGelhausen/figure-dump
RickGelhausen/IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
RickGelhausen/IntaRNA-benchmark
Data and scripts to benchmark IntaRNA
RickGelhausen/irsom_image
RickGelhausen/PagesTesting
RickGelhausen/pathsnake
A tool to perform functional enrichment analysis
RickGelhausen/sphinx-test
RickGelhausen/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
RickGelhausen/StartStopFinder
RickGelhausen/streamlit-testing
RickGelhausen/testRmd
testing rmd
RickGelhausen/translational_regulation
Detection of differential translated genes using Ribo-seq
RickGelhausen/websperiments
RickGelhausen/webtests