RickGelhausen/HRIBO
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
PythonGPL-3.0
Issues
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- 1
update config file
#10 opened by RickGelhausen - 0
allow custom annotation/genome file naming
#30 opened by RickGelhausen - 0
Paired end metagene-profiling support
#50 opened by RickGelhausen - 0
Add testing / linting
#49 opened by eggzilla - 1
TTS support
#46 opened by RickGelhausen - 3
Replace gffread
#25 opened by RickGelhausen - 0
Rename supplementary/metagene in reports
#38 opened by eggzilla - 1
Use of temp
#29 opened by RickGelhausen - 2
Bump version number and changelog
#36 opened by eggzilla - 1
optional SortMeRNA
#24 opened by RickGelhausen - 3
config.yaml
#31 opened by RickGelhausen - 2
templates
#33 opened by RickGelhausen - 1
rework tracks folder
#11 opened by RickGelhausen - 1
cluster template files
#35 opened by RickGelhausen - 3
additional requests
#17 opened by RickGelhausen - 2
Check annotation coordinates
#21 opened by eggzilla - 1
Clean folder structure
#26 opened by RickGelhausen - 3
create excel files
#12 opened by RickGelhausen - 0
clean Snakefiles
#32 opened by RickGelhausen - 2
metagene analysis
#14 opened by RickGelhausen - 3
mapping
#13 opened by RickGelhausen - 1
Add rule to gather final results in .zip
#28 opened by RickGelhausen - 0
rework ribotish
#16 opened by RickGelhausen - 1
switch for trim-galore to cutadapt
#15 opened by RickGelhausen - 0
gene synteny
#27 opened by RickGelhausen - 1
reparation is non-deterministic
#22 opened by RickGelhausen - 0
update sge.yaml
#18 opened by RickGelhausen