Check annotation coordinates
Closed this issue · 2 comments
eggzilla commented
Check annotation files for minus coodinates, used for features spanning the origin, e.g:
pSYSG ena gene -1055 1914 . - . gene_id "BAD02057"; gene_name "sll8049"; gene_source "ena"; gene_biotype "protein_coding";
The associated stop codon had the coordinates -1055 -1052
ensembl #epicfail
ribotish crashes due to this
eggzilla commented
Plastid however is not compatible with the absolute coordinates an metageneroistop fails
RickGelhausen commented
This should no longer be an issue