RightCake1's Stars
pandas-dev/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
scipy/scipy
SciPy library main repository
mwaskom/seaborn
Statistical data visualization in Python
statsmodels/statsmodels
Statsmodels: statistical modeling and econometrics in Python
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
lh3/seqtk
Toolkit for processing sequences in FASTA/Q formats
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
arpcard/rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
PapenfussLab/gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
TGAC/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
MDU-PHL/abritamr
A pipeline for running AMRfinderPlus and collating results into functional classes
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
sbslee/fuc
Frequently used commands in bioinformatics
rcs333/VAPiD
VAPiD: Viral Annotation and Identification Pipeline
vappiah/bacterial-genomics-tutorial
BioSina/Panakeia
Prokaryotic Pangenome Analysis
kloetzl/pfasta
A Pedantic FASTA Parser and Tool Set
kit4b/kit4b
A fully integrated K-mer Informed Toolkit for Bioinformatics
JinnJarBurger/Account-Service
BTalamantesBecerra/omicR
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
BTalamantesBecerra/omicR_for_RStudio
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.
Lagator-Group/Plasmid-Assembly-TF-Annotation-Snakemake
pavlohrab/process_fasta
A small collection of one-liners in a one bash script for fasta files processing.
abhijeetsingh1704/fastA2Q
simple and convenient program to convert fasta sequences to fastq sequences
limitedeternity/FASTAUtils
Various utilities for working with FASTA nucleotide sequences
PNNL-Comp-Mass-Spec/Fasta-Organism-Filter
Reads a protein FASTA file and filters the proteins by organism name, protein name, or taxonomy ID to create a new, filtered file.
sooraj14072001/TEAM-GENOMICS_ONE
Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!