Pinned Repositories
algebra
quick python algebra package
apg
Automated Password Generator (APG) fork
bbmm
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
CNT-MD
Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
ConsensusClusterPlus
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.
fqgrep
An approximate sequence pattern matcher for FASTQ/FASTA files.
GISTIC2_example
a example script and reference files to run GISTIC2
humanomics
Pipelines for analyses of -omics experiments in human
mousegenomics
Scripts for setting up genetics and genomics workstations without root privilages, running analysis pipelines, etc...
RodrigoGM's Repositories
RodrigoGM/mousegenomics
Scripts for setting up genetics and genomics workstations without root privilages, running analysis pipelines, etc...
RodrigoGM/algebra
quick python algebra package
RodrigoGM/apg
Automated Password Generator (APG) fork
RodrigoGM/bbmm
RodrigoGM/BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
RodrigoGM/CNT-MD
Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
RodrigoGM/ConsensusClusterPlus
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ConsensusClusterPlus.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ConsensusClusterPlus.
RodrigoGM/fqgrep
An approximate sequence pattern matcher for FASTQ/FASTA files.
RodrigoGM/GISTIC2_example
a example script and reference files to run GISTIC2
RodrigoGM/humanomics
Pipelines for analyses of -omics experiments in human
RodrigoGM/LinkedQTL
Simulation of two linked QTL in a single chromosome with varying number of markers, QTL location and effect sizes
RodrigoGM/Mmu2QTL
RodrigoGM/Nimbus
The Nimbus software suite for the analysis of amplicon based NGS data
RodrigoGM/QDNAseq
QDNAseq package for Bioconductor
RodrigoGM/rna-fusions
RodrigoGM/rnaseq_training
RodrigoGM/rodrigo.gm.github.io
RodrigoGM/SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
RodrigoGM/STA250Duncan
Assignments for STA250 course by Duncan Temple Lang
RodrigoGM/tgv_2023
RodrigoGM/WannaAln
fork of wannaAln