Rosemary94

Rosemary94's Stars

• milaboratory/mixcr

  MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

  Language:Kotlin32679

• Rosemary94/tcr-annotation-methodology

  📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

  1

• XiaoLuo-boy/ggheatmap

  ggplot2 version of heatmap

  Language:R8312

• agartland/pwseqdist

  A small package that efficiently computes distances between genetic sequences. Can accommodate similarity matrices, sequences of different lengths and custom metrics.

  Language:Python42

• antigenomics/vdjdb-db

  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

  Language:Groovy13127

• pogorely/COVID_vax_CD8

  Data and scripts for study Minervina, Pogorelyy et al. 2021

  Language:R32

• Rosemary94/Immprint

  ImmPrint answers the question "were these two samples extracted from the same individual ?" by looking at the numbers and sequences of shared unique TCR between the two samples.

  1

• statbiophys/Immprint

  ImmPrint answers the question "were these two samples extracted from the same individual ?" by looking at the numbers and sequences of shared unique TCR between the two samples.

  Language:Python53

• Rosemary94/tcr-dist

  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

  1

• jdgagnon/TCRdist_automation

  Scripts for automating the running of TCRdist

  Language:Python11

• Rosemary94/tcrregex

  regex based motif discovery

  1

• rbr1/BCR_TCR_PROCESSING_PIPELINE

  BCR/TCR processing pipeline for NGS data

  Language:Python62

• Rosemary94/RTCR

  A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.

  1

• justin-barton/tcr-pmhc

  A deep learning network for predicting TCR-pMHC binding

  Language:Jupyter Notebook51

• Thopic/TCR_pairings

  Companion repository of https://www.biorxiv.org/content/early/2018/06/28/353128

  Language:Jupyter Notebook41

• bittremieux/TCR-Classifier

  Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.

  Language:Jupyter Notebook103

• svalkiers/clusTCR

  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.

  Language:Python489

• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  Language:R30665

• imminfo/tcr

  [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

  Language:R3722

• kmayerb/tcrdist3

  flexible CDR based distance metrics

  Language:Python5317

• scverse/scirpy

  A scanpy extension to analyse single-cell TCR and BCR data.

  Language:Python21734

• kmayerb/tcrdist2

  Quantifiable predictive features define epitope-specific T cell receptor repertoires

  Language:Python144

• Rosemary94/DeepTCR

  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

  1

• TrainingByPackt/Interactive-Data-Visualization-with-Python

  Present your data as an effective and compelling story

  Language:Jupyter Notebook10298

• jupyter/jupyter

  Jupyter metapackage for installation, docs and chat

  Language:Python14.9k4.1k

• immunoengineer/gliph

  Grouping of Lymphocyte Interactions by Paratope Hotspots

  9030

• DataScienceSpecialization/courses

  Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

  Language:HTML4.1k31.4k

• mikessh/vdjtools

  Post-analysis of immune repertoire sequencing data

  Language:Groovy13040

• phbradley/tcr-dist

  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

  Language:Python7936

• jackfrued/Python-Core-50-Courses

  Python语言基础50课

  11.4k2.8k