Garbled output for inpainting

[jadolfbr]

Hello!

I am trying the inpainting test PDB. When I try the default mask or another loop, I get a garbled PDB output. I realize it's backbone-only, but it has not structure, just looks like spaghetti. Any recommendations?

python ../inpaint.py --task hal --checkpoint v02 --pdb=input/2KL8.pdb --out=output/inpaint_test --window=A,20,25 --num_designs 1 --inf_method=multi_shot --n_iters 10 --recycle_str_mode both  --clamp_1d 0.1 --dump_all

[jadolfbr]

Also, I did try the workaround and copied the hallucination/cache directory to the working directory, but I still get the same output.

[jueseph]

Hi, sorry for the late reply. This is likely an environment issue but it's been very inconsistent so has been hard to pin down. We're actually about to release a newer version of the code & weights. I'll try to fix this as part of that update. I can let you know when we've done that.

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On Tue, Mar 15, 2022 at 9:20 AM Jared Adolf-Bryfogle < ***@***.***> wrote: Also, I did try the workaround and copied the hallucination/cache directory to the working directory, but I still get the same output. [image: Screen Shot 2022-03-15 at 12 20 22 PM] <https://user-images.githubusercontent.com/3290052/158423919-c605e7b3-b956-4da0-b520-6bb792d5122b.png> — Reply to this email directly, view it on GitHub <#6 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AABCU54DLEG2R42C4IEBHGTVAC2FZANCNFSM5QZF7USA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[jadolfbr]

Thanks for the update!

[jueseph]

I've updated the repo with newer versions of the code and underlying weights. There could still be problems as some of the dependencies are sensitive to exact versions (dgl, torch-geometric, etc). Give it a try and let me know if it works.

[jadolfbr]

Sounds great! Will try it out!

[jadolfbr]

I am now on different hardware, and using the newer code allowed the tests to run to completion without garbled output.