RosettaCommons/RFDesign

Issues

• Can not install jaxlib==0.3.24 under cuda 12 environment

  #56 opened 10 months ago by erwusht
  1

• RuntimeError: nvrtc: error: invalid value for --gpu-architecture (-arch)

  #58 opened 8 months ago by rcrehuet
  0

• error while running Rifdock protocol

  #57 opened 8 months ago by anneday
  1

• Hallucination w/ receptor crashing while saving output

  #32 opened 2 years ago by Paulther
  2

• Inpainting is trying to connect multiple chains

  #29 opened 2 years ago by jadolfbr
  8

• Not found /software/rosetta/DAlphaBall.gcc

  #55 opened a year ago by double-vin
  3

• Mutation prediction for protein complex using rfjoint_mutation_effect_prediction.py

  #54 opened a year ago by Samuel-gwb
  0

• Error while running af2_interface_metrics.py

  #48 opened 2 years ago by leejy9548
  3

• Type Error with af2_interface_metrics.py

  #53 opened a year ago by aravinda1879
  3

• Issue with alphafold-complex predication with initial guess of binder position

  #38 opened 2 years ago by QILINY
  2

• no PDBs output/NameError: name 'aa_util' is not defined

  #51 opened a year ago by morin-andrew
  3

• Information on split_folder command

  #52 opened a year ago by aravinda1879
  2

• AF2_metrics jax error

  #50 opened a year ago by JonathanEAsh
  0

• Error in running hallucination

  #49 opened a year ago by JonathanEAsh
  2

• Icecream not part of the SE3-nvidia environment by default

  #47 opened 2 years ago by abhinavgupta0110
  0

• Af2_metrics error

  #45 opened 2 years ago by Lyang556
  0

• RuntimeError: CUDA out of memory.

  #44 opened 2 years ago by slives-lab
  0

• A possible misleading comment.

  #42 opened 2 years ago by zackmawaldi
  1

• psipred4 missing

  #41 opened 2 years ago by jIskCoder
  1

• Unclear documentation/tutorial or mistake

  #40 opened 2 years ago by jaded0
  0

• DAlphaBall missing

  #39 opened 2 years ago by jIskCoder
  2

• missing compile_metrics.py file

  #35 opened 2 years ago by aravinda1879
  2

• Error while running af2_metric.py file

  #37 opened 2 years ago by sssure02
  0

• How to mask out the amino acid in that mutation position?

  #36 opened 2 years ago by fuxuliu
  3

• SAP script

  #34 opened 2 years ago by sirius777coder
  0

• Ask about the af2 dependency under RFDesign, 'RFDesign/scripts/af2_metrics.py'

  #7 opened 2 years ago by Licko0909
  3

• Multiple ModuleNotFoundError

  #33 opened 2 years ago by kierandidi
  1

• Missing minterface.xml in scripts folder

  #23 opened 2 years ago by mdamgaard-biolib
  1

• Workflow for resultant inpainting models

  #30 opened 2 years ago by jadolfbr
  2

• AF2 Model Parameters Download for af2_metrics.py

  #27 opened 2 years ago by Germanki
  1

• Blank PDB?

  #28 opened 2 years ago by jadolfbr
  0

• AF2 Dependencies for af2_metrics.py

  #26 opened 2 years ago by Germanki
  4

• AF2 metrics prediction jax error

  #25 opened 2 years ago by mdamgaard-biolib
  6

• Garbled output for inpainting

  #6 opened 2 years ago by jadolfbr
  6

• predict with alphafold meet jax problem

  #24 opened 2 years ago by Zhang-hn1125
  0

• Missing rosetta flags and xml script for relaxation in SH3 tutorial

  #19 opened 2 years ago by mdamgaard-biolib
  2

• Inpainting not using --receptor_chain argument

  #16 opened 2 years ago by ajbordner
  1

• Missing compile_metrics.py in scripts folder

  #18 opened 2 years ago by BazingaOoO
  1

• ModuleNotFoundError: No module named 'tree'

  #22 opened 2 years ago by jnoske
  2

• May run trfold_relax.sh out of slurm possible?

  #20 opened 2 years ago by DaHenz
  1

• RuntimeError: _cdist_backward requires X1 to be contiguous

  #15 opened 2 years ago by philhuett
  3

• Missing file in

  #17 opened 2 years ago by BazingaOoO
  0

• Aborted (core dumped) when test the scripts

  #14 opened 2 years ago by ScorpioLea
  0

• Error while running af2_interface_metrics.py

  #13 opened 2 years ago by jongseo-park
  1

• Is there any way to provide MSA of receptor for af2_metrics.py ?

  #12 opened 2 years ago by jongseo-park
  2

• Unnecessary residue change when loop inpainting.

  #10 opened 2 years ago by YaoYinYing
  2

• About arguments in hallucination.py for two-chain hallucination

  #9 opened 2 years ago by jongseo-park
  3

• RFDesign inpainting ./run_tests.sh: line 12: 7385 segmentation fault （core dumped）

  #8 opened 2 years ago by 928116801
  1

• index out of range

  #4 opened 3 years ago by yx0516
  2

• no alphafold module in hallucination/models/

  #5 opened 3 years ago by Sigurd-git
  3