/tensorflow_graphs

trRosetta model binaries for using the trRosetta protocol within Rosetta proper

Primary LanguagePureBasicMIT LicenseMIT

Rosetta Tensorflow graph repository submodule

A submodule containing Tensorflow models for various machine learning-based protocols.

History

  • Created as "trRosetta" repo on 21 Jan 2021 by Vikram K. Mulligan, Flatiron Institute (vmulligan@flatironinstitute.org).
  • Renamed to "tensorflow_graphs" repo on 22 Jan 2021.

Contents

trRosetta

A machine learning model that takes an input multiple sequence alignment and produces an output estimate of pairwise residue distances and angles, useful for protein structure prediction.

predict_PTMs

Several machine learning models that take structural and sequence information as input features and predict various post-translational modifications, meant to be used with Rosettas PTMPredictionMetric.

ESM

Contains the Evolutionary Scaling Modeling language model family from the FAIR team, adapted from PyTorch to Tensorflow by Huggingface.