Roth-Lab/pyclone-vi

AttributeError: module 'numba' has no attribute 'jitclass'

Closed this issue · 3 comments

jchenpku commented

$pyclone-vi --help
Traceback (most recent call last):
File "/miniconda3/envs/pyclone-vi/bin/pyclone-vi", line 5, in
from pyclone_vi.cli import main
File "/miniconda3/envs/pyclone-vi/lib/python3.8/site-packages/pyclone_vi/cli.py", line 3, in
import pyclone_vi.run
File "/miniconda3/envs/pyclone-vi/lib/python3.8/site-packages/pyclone_vi/run.py", line 4, in
from pyclone_vi.data import load_data
File "/miniconda3/envs/pyclone-vi/lib/python3.8/site-packages/pyclone_vi/data.py", line 172, in
@numba.jitclass([
AttributeError: module 'numba' has no attribute 'jitclass'

aroth85 commented

Apologies. Numba has moved the jitclass to a different package. If you install an older version of numba through conda it should work. I will try to patch pyclone-vi in the next few days to work with the updated version.

  • 👍1
aroth85 commented

Should be fixed in f498d09. Let me know if there is any issue.

jchenpku commented

Now the error disappeared. Thanks.