Roth-Lab/pyclone-vi

Issues

• Install pyclone-vi on Galaxy Europe

  #41 opened 4 months ago by bdartigues
  0

• AttributeError: module 'numpy' has no attribute 'math'. Did you mean: 'emath'?

  #39 opened 4 months ago by endertial
  3

• explain major and minor cn for pyclone input

  #40 opened 4 months ago by endertial
  0

• Non-integer copy numbers

  #38 opened 5 months ago by Pranav-Garg
  0

• input data query

  #37 opened 6 months ago by bagieutopia
  0

• Error while running sub-command `fit`

  #36 opened a year ago by AntoniaChroni
  3

• How can one tell from the results whether a mutation is clonal or not?

  #35 opened a year ago by THT-sleepy
  0

• Minimum number of mutations to use as input?

  #33 opened a year ago by THT-sleepy
  5

• too less clones in results

  #34 opened a year ago by songmingl
  0

• mutations with no data in some samples

  #26 opened 2 years ago by ZWael
  5

• Error in running example file, how to solve this error?

  #32 opened a year ago by parth2608
  0

• Mutation IDs do not get loaded

  #31 opened a year ago by RadkaP
  0

• ValueError: need at least one array to stack

  #29 opened a year ago by RadkaP
  0

• Questions about the calculation of CCF

  #30 opened a year ago by huerqiang
  0

• Data loading issue

  #22 opened 2 years ago by mda-hillmanlab
  4

• Please add numpy version to requirements.txt

  #28 opened a year ago by rabiafidan
  1

• Pre-processing query

  #27 opened 2 years ago by seedgeorge
  2

• error in np.sqrt(var)

  #25 opened 2 years ago by jsha129
  0

• Interpretation of the results

  #18 opened 3 years ago by YanaVassileva
  1

• Cluster assignment probability filtering

  #23 opened 2 years ago by rpensch
  1

• installation issue

  #15 opened 4 years ago by Subhayan18
  4

• How to prepare input data from vcf/maf file and CNVcaller output

  #8 opened 4 years ago by TnakaNY
  2

• installation problem!

  #24 opened 2 years ago by Golnazthr
  0

• A Type Error while running pyclone-vi fit

  #21 opened 3 years ago by dsagar18
  1

• Extracting additional model parameters

  #20 opened 3 years ago by wir963
  2

• running Pyclone-VI with total copy number

  #19 opened 3 years ago by bhinderb
  2

• Subclonal copy number of segment overlapping mutation

  #17 opened 3 years ago by underbais
  0

• Error if samples don't contain overlapping mutation

  #14 opened 3 years ago by willemdek11
  4

• Interpret resulting information

  #16 opened 3 years ago by Antioxidantcoco
  0

• Odd errors in larger data sets?

  #12 opened 4 years ago by vortexing
  1

• Beta-binomial vs binomial for WGS 70x data

  #11 opened 4 years ago by TnakaNY
  2

• How do I get variant_allele_frequency?

  #9 opened 4 years ago by TnakaNY
  3

• jitclass removed from numba 0.52.0

  #10 opened 4 years ago by fizwit
  3

• AttributeError: module 'numba' has no attribute 'jitclass'

  #7 opened 4 years ago by jchenpku
  3

• CCF estimation for minor_cn=0

  #6 opened 4 years ago by xliu-uth
  1

• RuntimeWarning on write-results-file, all cellular_prevalence = 1

  #5 opened 4 years ago by brucemoran
  2

• "cellular_prevalence_std" of some "cluster_id" are missing.

  #3 opened 4 years ago by b-niu
  3

• About the output.

  #2 opened 4 years ago by b-niu
  2

• About the mathematical principles and citations in papers

  #1 opened 4 years ago by b-niu
  2