Pinned Repositories
contra_workshop
Notes from the CONTRA cancer evolution workshop
ESQmodel
A biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.
FlowVB
Gating Flow Cytometry Data with Variational Bayes
humi_pipeline
Pipeline for running Hierachical UMI model
JointSNVMix
Automatically exported from code.google.com/p/joint-snv-mix
pgsm
pyclone
Probabilistic model for inferring clonal population structure from deep NGS sequencing.
pyclone-vi
Fast method for inferring cancer clonal population structure from SNV data.
pydp
SpatialSort
A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.
Roth Lab's Repositories
Roth-Lab/pyclone
Probabilistic model for inferring clonal population structure from deep NGS sequencing.
Roth-Lab/pyclone-vi
Fast method for inferring cancer clonal population structure from SNV data.
Roth-Lab/pgsm
Roth-Lab/contra_workshop
Notes from the CONTRA cancer evolution workshop
Roth-Lab/SpatialSort
A spatially aware Bayesian clustering approach that allows for the incorporation of prior biological knowledge.
Roth-Lab/pydp
Roth-Lab/ESQmodel
A biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.
Roth-Lab/FlowVB
Gating Flow Cytometry Data with Variational Bayes
Roth-Lab/humi_pipeline
Pipeline for running Hierachical UMI model
Roth-Lab/JointSNVMix
Automatically exported from code.google.com/p/joint-snv-mix
Roth-Lab/pgfa
Particle Gibbs Feature Allocation
Roth-Lab/scg
Software for inference of clonal genotypes using targeted single cell (nucleus) sequencing.
Roth-Lab/merfish-segmentation
Roth-Lab/pgfa_experiments
Experiments for Particle Gibbs Feature Allocation paper
Roth-Lab/phyclone
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
Roth-Lab/Roth-Lab.github.io
Roth-Lab/single_cell_FL