Roth-Lab/pyclone

Issues

• Pyclone Input

  #28 opened a year ago by sunyu1010
  0

• Reproducibility issue

  #27 opened 2 years ago by jamelee
  1

• Reproducility issue

  #26 opened 2 years ago by jamelee
  0

• Preparing input files for pyclone from Varscan output snp files

  #25 opened 2 years ago by maheshworpaudel5001
  0

• ImportError: No module named cli

  #16 opened 5 years ago by dawe
  1

• Strange values for cellular prevalence and variant allele frequency>?

  #11 opened 5 years ago by jmchan88
  1

• ref_count and var_count input for Pyclone

  #22 opened 4 years ago by TnakaNY
  3

• Should at least one mutation id overlap between any two of the input samples?

  #24 opened 3 years ago by lincj1994
  0

• is tcltk necessary? can I run in non-interactive mode?

  #23 opened 4 years ago by xmzhuo
  2

• major/minor copy number must be integer?

  #21 opened 4 years ago by TnakaNY
  2

• how to use private somation mutation in pyclone?

  #19 opened 4 years ago by YunjieSong
  1

• minor_cn equal to the major_cn

  #20 opened 4 years ago by pawelqs
  0

• ValueError: gammavariate: alpha and beta must be > 0.0

  #1 opened 7 years ago by 1988liszt
  4

• pyclone wiki is not available

  #18 opened 4 years ago by ryansohny
  1

• cannot cache function 'log_beta'

  #5 opened 6 years ago by jatintalwar
  5

• How to classify subclone from PyClone result

  #14 opened 5 years ago by bioxu
  0

• Modify x label rotations in parallel_coordinates?

  #13 opened 5 years ago by wangshun1121
  0

• recommended inputs for whole exome sequencing data

  #12 opened 5 years ago by JakeConway
  0

• Mutations in common not found across yamls

  #9 opened 6 years ago by schianta
  3

• --init_method connected not present

  #10 opened 6 years ago by rschenck
  2

• Can Python3 use Pyclone?

  #8 opened 6 years ago by yanglq-bio
  1

• Fail to reproduce tutorial sample results in 2014 paper

  #7 opened 6 years ago by gengyuncong
  1

• No pdfs under result/plots/loci

  #6 opened 6 years ago by Tina9
  0

• run testfile meet error

  #4 opened 6 years ago by WRui
  0

• RuntimeError: Invalid DISPLAY variable

  #3 opened 6 years ago by biolxy
  2

• Incorrect if statement

  #2 opened 6 years ago by janka2012
  0