Rubbert

Rubbert's Stars

• rolandsz/Mi-Fit-and-Zepp-workout-exporter

  A Python script which allows users to export workout data from Mi Fit and Zepp applications.

  Language:Python12971214

• epigen/atacseq_pipeline

  Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

  Language:Python433492

• epigen/enrichment_analysis

  A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

  Language:Python252231

• aryarm/varCA

  Use an ensemble of variant callers to call variants from ATAC-seq data

  Language:Python232397

• epigen/dea_limma

  A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

  Language:R185211

• epigen/cemm.slurm.sm

  CeMM's Snakemake SLURM cluster profile

  Language:Shell10621

• epigen/spilterlize_integrate

  A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.

  Language:Python105151

• EMPOWER2024/prewebinars

  Language:Jupyter Notebook41