Rudge Lab

Pinned Repositories

brain
Reservoir computing with coupled genetic oscillators
Language:MATLAB10
CellModeller
GPU-accelerated multicellular modelling framework
Language:Python11
FluoPi
Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.
Language:Jupyter Notebook26 7 215
InfoTracking
Informt
Language:Jupyter Notebook10
Inverse_Characterization
Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles
Language:Jupyter Notebook0 3 40
killifish
CellModeller model files, analysis notebooks, and scripts for modeling annual killifish.
Language:Jupyter Notebook2 3 00
LOICA
Logical Operators for Integrated Cell Algorithms
Language:Jupyter Notebook6 3 372
LOICA.jl
LOICA but Julia
Language:Julia1 0 00
PUDU
Protocol Unified Design Unit
Language:Python5 3 470
WebCM
WebCM is a web platform used to develop and run bacterial simulations
Language:JavaScript0 3 00

Rudge Lab's Repositories

RudgeLab/FluoPi
Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.
Language:Jupyter Notebook26 7 215
RudgeLab/LOICA
Logical Operators for Integrated Cell Algorithms
Language:Jupyter Notebook6 3 372
RudgeLab/PUDU
Protocol Unified Design Unit
Language:Python5 3 470
RudgeLab/killifish
CellModeller model files, analysis notebooks, and scripts for modeling annual killifish.
Language:Jupyter Notebook2 3 00
RudgeLab/brain
Reservoir computing with coupled genetic oscillators
Language:MATLAB10
RudgeLab/CellModeller
GPU-accelerated multicellular modelling framework
Language:Python11
RudgeLab/CMStatPhys
Statistical physics analysis of CellModeller simulations
Language:Python1 5 0
RudgeLab/InfoTracking
Informt
Language:Jupyter Notebook10
RudgeLab/LOICA.jl
LOICA but Julia
Language:Julia1 0 00
RudgeLab/piv
Particle image velocimetry for tracking movement and growth of cells.
Language:Jupyter Notebook1 6 01
RudgeLab/Corchea
Hardware control and analysis for Corchea paper flow device
Language:Jupyter Notebook0 3 00
RudgeLab/corcheaweb
Landing page for Corchea's project
Language:HTML0 4 00
RudgeLab/Inverse_Characterization
Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles
Language:Jupyter Notebook0 3 40
RudgeLab/SpatialOscillator
Language:Jupyter Notebook0 4 00
RudgeLab/Tutorials
Programming, image processing, data analysis, and other tutorials for the lab
Language:Jupyter Notebook0 4 00
RudgeLab/WebCM
WebCM is a web platform used to develop and run bacterial simulations
Language:JavaScript0 3 00
RudgeLab/.github
Organization profile
RudgeLab/CellModeller5
Language:C++
RudgeLab/Corchea-1
Paper-fluidic open science hardware for research, teaching and more
Language:Jupyter Notebook1 0
RudgeLab/final-project-ajananias
final-project-ajananias created by GitHub Classroom
RudgeLab/final-project-cghernandez
final-project-cghernandez created by GitHub Classroom
3 0
RudgeLab/final-project-Prosimio
final-project-Prosimio created by GitHub Classroom
RudgeLab/final-project-ptbravo
final-project-ptbravo created by GitHub Classroom
Language:Python1
RudgeLab/GenePhLo
Phase-based genetic logic circuit simulation
2 0
RudgeLab/Inverters
Code and notebooks to analyze data from plate reader assays which involves proteic and CRISPRi inverters
Language:Jupyter Notebook4 01
RudgeLab/LBS-Toehold
Language:Matlab
RudgeLab/MorphoOrganismos
Language:Jupyter Notebook1
RudgeLab/napari-popdyn
Napari plugin for quantitative population dynamics analysis
Language:Python1
RudgeLab/popdyn
Population dynamics
Language:Jupyter Notebook1
RudgeLab/pyrite
Analysis code for studying bacterial colony formation on pyrite