The files are for benchmarking highly variable gene(HVG) selection methods.
Benchmark_HVG_1_Methods.R contains the processing steps for all the baseline methods and methods mixture. Refer to https://github.com/RuzhangZhao/mixhvg for the R package.
Benchmark_HVG_2_Evaluation_Criteria.R: contains the all the evaluation criteria for cell sorting, CITEseq, and MultiomeATAC, separately.
Benchmark_HVG_3_RunExample.R: contains examples for processing HVG selection methods and running evaluation.