single-cell-multiomics
There are 15 repositories under single-cell-multiomics topic.
gao-lab/GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
pinellolab/dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
powellgenomicslab/Nebulosa
R package to visualize gene expression data based on weighted kernel density estimation
pinellolab/pyrovelocity
š«robabilistic modeling of RNA velocity ā¬±
quadbio/scMultiome_analysis_vignette
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
sqjin/scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
jeongdo801/scNOVA
scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
AI4SCR/MatchCLOT
Python package implementing our method MatchCLOT for multimodal single-cell data integration
xichensf/magical
R and MATLAB scripts for MAGICAL
chooliu/snm3Cseq_Pipeline
bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)
chooliu/snmCTseq_Pipeline
Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.
p4rkerw/Wilson_GBio_2024
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
sagar161286/multimodal_gdTcells
Multimodal profiling reveals site-specific adaptation and tissue residency hallmarks of Ī³Ī“ T cells across organs in mice.
ytanaka-bio/cisMultiDeep
Workflow to identify functional cis-regulatory regions for each annotated cell type