gao-lab/GLUE

Issues

• An error in running permutation test for multi-omic data

  #125 opened 4 months ago by HelloWorldLTY
  0

• Example datasets are not downloadable

  #124 opened 4 months ago by Hw-31016
  0

• scglue.data.get_gene_annotation gives many NaN values.

  #122 opened 5 months ago by oldvalley49
  5

• Array of nans when running scglue.models.fit_SCGLUE

  #123 opened 5 months ago by sanikadeshmukh3
  0

• get_gene_annotation returns Nan

  #118 opened 8 months ago by fafa92
  3

• How to improve integration

  #120 opened 7 months ago by fe4960
  2

• Not able to submit multiple jobs running scglue

  #119 opened 6 months ago by piyushjo15
  4

• Error on scglue.genomics.rna_anchored_guidance_graph: not all features are strand specific!

  #121 opened 7 months ago by Freedom04
  1

• Query mapping

  #73 opened 2 years ago by ccruizm
  10

• KeyError at Draft a coexpression-based network

  #117 opened 8 months ago by yolcasmar
  2

• Question about preprocessing ATAC-Seq

  #116 opened 9 months ago by luglilab
  4

• No such kernel named ir_4.0.2

  #113 opened 8 months ago by Khalid-Usman
  1

• Error in scglue.genomics.window_graph

  #81 opened a year ago by LalicJ
  8

• KeyError: '__scglue__'

  #115 opened 10 months ago by OswaldoBornemann
  2

• Does LSI require all peaks for optimal results, especially when dealing with ultra-scale datasets?

  #108 opened a year ago by YH-Zheng
  5

• Question about PairedSCGLUEModel

  #87 opened a year ago by alitinet
  6

• Very Frustrating

  #112 opened a year ago by Khalid-Usman
  2

• Error on scglue.genomics.rna_anchored_guidance_graph

  #109 opened a year ago by travilucas
  4

• if this can be used for metabolome

  #111 opened a year ago by lvmt
  2

• Error in bash

  #101 opened a year ago by Khalid-Usman
  7

• Question about the knowledge graph

  #104 opened a year ago by sinkahak
  1

• Error in `reduceDimension` function due to multiple values in `@expressionFamily@vfamily`

  #106 opened a year ago by aqlkzf
  1

• Question about TF motif/ChIP-seq data In tuturial

  #110 opened a year ago by xuzhougeng
  1

• Inconsistent File Download for ENCODE TF-human Dataset

  #105 opened a year ago by aqlkzf
  2

• Input contains NaN when LSI

  #103 opened a year ago by cynthier
  11

• Issues when use_cell_type is not None

  #78 opened a year ago by AprilYuge
  5

• how to construct guidence between scATAC data and single cell DNA methylation data

  #93 opened a year ago by YettaWang
  1

• issues with rna_anchored_guidance_graph

  #75 opened a year ago by ahassien
  8

• question abou pre-process of ATAC data

  #90 opened a year ago by chenc327
  2

• cluster analysis on the integrated data

  #94 opened a year ago by JingGuo1997
  1

• Error in guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac)

  #97 opened a year ago by niuhulu-rui
  1

• Unable to install on windows 10

  #95 opened a year ago by Khalid-Usman
  1

• Unable to download Chen-2019-FRAGS2RNA.h5ad

  #96 opened a year ago by Khalid-Usman
  1

• Can glue generate cross modality data？

  #102 opened a year ago by GlancerZ
  1

• Issue with IntervalTree ValueError in pyGenomeTracks Visualization

  #99 opened a year ago by aqlkzf
  3

• _EngineTerminateException error and AttributeError while running scglue.fit_SCGLUE

  #98 opened a year ago by niuhulu-rui
  0

• ValueError when using LSI

  #92 opened a year ago by MohammadIzadi
  1

• Would it be possible to ensure specific conditions are matched for a metacell between scRNA and scATAC datasets

  #88 opened a year ago by revolvefire
  2

• About node feature in the guidance graph

  #91 opened a year ago by yuxu-1
  4

• Training with long-range guidance graph

  #89 opened a year ago by valentinwust
  2

• Some questions on mini-batching

  #79 opened a year ago by Chengwei94
  1

• Early stopping during model training

  #85 opened a year ago by YangLi-Bio
  3

• Looking for the last step in the GLUE framework.

  #83 opened a year ago by vietdhoang
  2

• CLUE paper reproducibility code

  #84 opened a year ago by valentinwust
  6

• scglue.models.fit_SCGLUE Error

  #80 opened a year ago by fe4960
  3

• Recover previous glue model

  #82 opened a year ago by amachadolopez
  8

• Loss computations for CLUE

  #74 opened a year ago by jmayank23
  1

• Multiple batch variables

  #76 opened 2 years ago by sinkahak
  2

• Error in scglue.models.fit_SCGLUE() function

  #77 opened 2 years ago by LalicJ
  0

• Integrate full length Smart-seq2 data

  #72 opened 2 years ago by ccruizm
  5