Fraunhofer SCAI Bioinformatics Department

Deparment of Bioinformatics at Fraunhofer SCAI

Pinned Repositories

datastew
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
Language:Python4 4 320
EpilepsyOntology
2 2 11
ExMed-BERT
Language:Python6 4 01
index
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
Language:TypeScript3 3 161
MultiGML
MultiGML
Language:Python7 1 14
MultiNODEs
Language:Python6 3 12
PDataViewer
Parkinsons Disease cohort landscape visualization
Language:TypeScript3 1 630
STEP
Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.
Language:Python5 4 13
tsnepad
AD & PD cohort variable distributions
Language:HTML3 3 00
Web-of-Clint
web of public health intelligence data tooling
Language:Java2 4 90

Fraunhofer SCAI Bioinformatics Department's Repositories

SCAI-BIO/MultiGML
MultiGML
Language:Python7 1 14
SCAI-BIO/ExMed-BERT
Language:Python6 4 01
SCAI-BIO/MultiNODEs
Language:Python6 3 12
SCAI-BIO/STEP
Data and code for STEP (Siamese Twin deep sequence Embedding of Proteins) approach.
Language:Python5 4 13
SCAI-BIO/datastew
Python library for intelligent data stewardship using Large Language Model (LLM) embeddings
Language:Python4 4 320
SCAI-BIO/index
Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization
Language:TypeScript3 3 161
SCAI-BIO/PDataViewer
Parkinsons Disease cohort landscape visualization
Language:TypeScript3 1 630
SCAI-BIO/tsnepad
AD & PD cohort variable distributions
Language:HTML3 3 00
SCAI-BIO/EpilepsyOntology
2 2 11
SCAI-BIO/Web-of-Clint
web of public health intelligence data tooling
Language:Java2 4 90
SCAI-BIO/ad-mapper
Language:Python1 3 20
SCAI-BIO/helm-upgrade-actions
Template to automatically build & deploy services to Kubernetes (k8s) using helm and github actions
Language:HTML1 3 00
SCAI-BIO/mirna-disease-association-detection
MiRNA-disease association detection through text mining methods.
Language:Python1 3 11
SCAI-BIO/PD-progression-types
Language:R1 2 01
SCAI-BIO/sam
Terminology management service
Language:Java1 2 3
SCAI-BIO/syndat
Synthetic data quality evaluation & visualization
Language:Python1 3 40
SCAI-BIO/tau-kg-benchmarking-GPT
Benchmarking the performance of GPT-based LLMs against human curated Tau KG from Human Brain Pharmacome (HBP)
Language:Jupyter Notebook1 3 00
SCAI-BIO/adr-detection-with-knowledge-fusion
ADR Deteciton with Knowledge Fusion Approaches
Language:Python0 3 01
SCAI-BIO/bipolar-disorder-ontology
Bipolar Disorder Ontology
0 3 00
SCAI-BIO/covid-NDD-comorbidity-NLP
This work aims to integrate diverse, curated biological databases with a comprehensive analysis of the growing body of literature on the potential long-term neurological consequences of COVID-19 infections, employing advanced natural language processing and text mining techniques.
Language:Jupyter Notebook0 4 00
SCAI-BIO/MMPK-SciML
Official implementation of the paper Scientific Machine learning for predicting plasma concentrations in anti-cancer therapy
Language:Python0 2 00
SCAI-BIO/MultiNODEs_NewImplementation
MultiNODEs New Implementation
Language:Python0 3 00
SCAI-BIO/owl-tooling
Helpers for importing OWL files, reasoning over OWL files, etc.
Language:Java0 2 00
SCAI-BIO/tau-kg-extension-nlp
Extending the Tau subgraph within the pharmacome using NLP.
Language:Jupyter Notebook0 3 00
SCAI-BIO/BiomarkerOntology
The Biomarker Ontology
3 0
SCAI-BIO/causal-npi-effects
A causal machine learning framework to assess effects of non-pharmaceutical interventions on pandemic disease spread.
Language:Python2 0
SCAI-BIO/Dynamic_Ensemble
A Dynamic Ensemble Model for short-term Forecasting in Pandemic Situations
Language:Python2 0
SCAI-BIO/service-template
4 0
SCAI-BIO/wasterwater_analysis
Language:Jupyter Notebook2 0
SCAI-BIO/zetomap
An AOP network visualizer and prediction tool for the ZET-O-MAP project.
Language:TypeScript2 0