SCCAF/sccaf

Outdated scanpy dependency

Opened this issue · 1 comments

Thank you for your cool package. I've been experimenting with it on my own data lately.

The issue that arose after installing it (from PyPI) is that the 'scanpy==1.4.6' dependency is quite outdated. Downgrade of scanpy caused some issues that scanpy team already fixed, i.e. scverse/scanpy#1486.

Could you bump the dependencies in order to avoid this issue?

Thanks..
I am using this module for my analysis but it uses scanpy==1.4.6 if i use upgraded version of scanpy this program fails.

can you please update this scanpy version to recent ones.

Using this version i am not able to calculate the "pts" from scanpy it only works 1.8 above

T