SCCAF/sccaf

Issues

• install and read problem : SCCAF conflicts with new version of scanpy and anndata package and as I installed old version of scanpy it couldn't read my processed h5ad file

  #51 opened 2 months ago by Fateme2112
  0

• Pandas cannot sent attribute

  #50 opened a year ago by zsfrbkv
  1

• Scanpy==1.4.6 dependency while working with SCCAF

  #48 opened 2 years ago by AkilaRanjith
  0

• Outdated scanpy dependency

  #47 opened 2 years ago by maxim-h
  1

• NameError: name 'default_26' is not defined

  #45 opened 3 years ago by cystone
  1

• ValueError: At least one label specified must be in y_true

  #36 opened 4 years ago by tina-roostaei
  4

• error: write h5 file fail

  #39 opened 4 years ago by zznx
  1

• How to collect and plot the accuracies of all SCCAF rounds

  #42 opened 4 years ago by Puriney
  0

• problem with SCCAF installation using conda

  #41 opened 4 years ago by mkrzak
  0

• IndexError when performing SCCAF cluster analysis

  #40 opened 4 years ago by leomorelli
  0

• Citation

  #38 opened 4 years ago by cbiagii
  0

• Errors when using low_res parameter to constrain optimization

  #33 opened 4 years ago by s2hui
  1

• how to use original Dimension Reduction information from Seurat.

  #35 opened 4 years ago by aina91
  4

• Using the commands in 'Parallel run of assessments' could raise 'FileNotFoundError'

  #37 opened 4 years ago by lsq2
  0

• Error when running with plot=TRUE

  #34 opened 4 years ago by s2hui
  0

• Run SCCAF "total error" in Galaxy

  #32 opened 4 years ago by mariusrueve
  0

• SCCAF for scATAC-seq

  #31 opened 4 years ago by RegnerM2015
  0

• galaxy typos

  #30 opened 4 years ago by colindaven
  0

• SCCAF cli should exit with an error when no UMAP or tSNE embeddings are available

  #22 opened 5 years ago by pcm32
  0

• On occassions, cross validation will fail because sampling picks sets belonging to a single class

  #20 opened 5 years ago by pcm32
  1

• SCCAF should exit with error code when missing anndata construct

  #13 opened 5 years ago by pcm32
  0

• Require psutil as a dependency to gracefully kill processes when OOM

  #16 opened 5 years ago by pcm32
  0

• plot_roc and gray heatmap are producing large number of matplotlib figures open warning

  #15 opened 5 years ago by pcm32
  0

• louvain not declared as dependency

  #1 opened 5 years ago by pcm32
  2

• joblib needs to be added as dependency

  #2 opened 5 years ago by pcm32
  1

• many SCCAF methods can only be used from inside iPython/Jupyter notebooks

  #3 opened 5 years ago by pcm32
  2