pcm32
Technical Coordinator - Gene Expression Team. Bioinformatician, Galaxy-Bioconda-Biocontainers enthusiast.
EMBL-EBIHinxton, Cambridge, UK
Pinned Repositories
BiNCheWeb
A dynamic web project that performs enrichment analysis based on ChEBI ontology
cdk
The Chemistry Development Kit
FASTLipid
FastLipid - The underlying theoretical lipid generator powering LipidHome
galaxy-helm-charts
Deployment of Galaxy on Kubernetes through Helm Charts
galaxy-library-maker
Automated creation of Galaxy libraries from
kubespray-ebi-portal
Kubespray deployment using the EBI Cloud Portal specification
metabolomics-workflows-course
PhenoMeNal materials for the Metabolomics Workflows Course
transator-container
Container for PKS Predictor TransAtor
pcm32's Repositories
pcm32/galaxy-library-maker
Automated creation of Galaxy libraries from
pcm32/ansible-galaxy
An Ansible role for managing a Galaxy server
pcm32/ansible-gie-proxy
Ansible Role for setting up the Node.js proxy for Galaxy Interactive Environments/Tools
pcm32/ansible-role-supervisor
Ansible Role - Supervisor
pcm32/ansible-role-zookeeper
Ansible role to install Apache Zookeeper
pcm32/bioblend
A Python library for interacting with CloudMan and Galaxy API
pcm32/biohackathon
Hackathon & Training
pcm32/cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets
pcm32/celltypist
A tool for semi-automatic cell type classification
pcm32/charts
Curated applications for Kubernetes
pcm32/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
pcm32/decoupler-py
Python package to infer biological activities from omics data using a collection of methods.
pcm32/galaxy
Data intensive science for everyone.
pcm32/galaxy-docker-k8s
An Ansible playbook for building a Galaxy container for Kubernetes.
pcm32/infrastructure-playbook
Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
pcm32/iwc
Intergalactic Workflow Commission
pcm32/multi-package-containers
Testing building mulled containers for multi-requirement tools.
pcm32/ontology-development-kit
Bootstrap an OBO Library ontology
pcm32/ot-baseline-feed
Atlas baseline dump generator for Open Targets
pcm32/planemo-monitor
Planemo scripting to monitor repositories and register tool containers.
pcm32/proteomics-metadata-standard
The Proteomics Experimental Design file format: Standard for experimental design annotation
pcm32/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
pcm32/r-umap-feedstock
A conda-smithy repository for r-umap.
pcm32/scatlas_ontology
SCA_Ontology
pcm32/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
pcm32/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
pcm32/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
pcm32/training-material
A collection of Galaxy-related training material
pcm32/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
pcm32/website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)