pcm32
Technical Coordinator - Gene Expression Team. Bioinformatician, Galaxy-Bioconda-Biocontainers enthusiast.
EMBL-EBIHinxton, Cambridge, UK
Pinned Repositories
BiNCheWeb
A dynamic web project that performs enrichment analysis based on ChEBI ontology
cdk
The Chemistry Development Kit
FASTLipid
FastLipid - The underlying theoretical lipid generator powering LipidHome
galaxy-helm-charts
Deployment of Galaxy on Kubernetes through Helm Charts
galaxy-library-maker
Automated creation of Galaxy libraries from
kubespray-ebi-portal
Kubespray deployment using the EBI Cloud Portal specification
meta-analysis-ot
metabolomics-workflows-course
PhenoMeNal materials for the Metabolomics Workflows Course
transator-container
Container for PKS Predictor TransAtor
pcm32's Repositories
pcm32/FASTLipid
FastLipid - The underlying theoretical lipid generator powering LipidHome
pcm32/AnnotationChooser
pcm32/binche-core
BiNChE - ChEBI based enrichment analysis of small molecule collections.
pcm32/CellProfiler
CellProfiler is open-source cellular image analysis software.
pcm32/cm2017
pcm32/container-galaxy-k8s-runtime
First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator
pcm32/container-testing-midcor
pcm32/docker-batman
pcm32/docker-recipes
Dockerfiles to build Galaxy images
pcm32/irap
integrated RNA-seq Analysis Pipeline
pcm32/iso2flux
pcm32/isodyn
pcm32/k8s_demo
k8s Hands-on/demonstration
pcm32/kargo-cli
Easy to use command line tool for kubernetes deployment with kargo
pcm32/katacoda-scenarios
Katacoda Scenarios
pcm32/kube-cluster-osx
Local development multi node Kubernetes Cluster for macOS made very simple
pcm32/LayoutPipeline
A pipeline to provide layouts starting from a reactions/pathway data source.
pcm32/mdk
Work in progress - transferring chemet (more details soon)
pcm32/mzml2isa-galaxy
mzml2isa for galaxy
pcm32/NCBIWebServices
A set of Java clients to access NCBI web services
pcm32/packer-coreos-test
Shows sftp issue when using packer with Ansible to provision a CoreOS machine.
pcm32/pnmnl-ebi-webinar-01
Materials for the PhenoMeNal EBI Webinar and EMN (Metabolomics Society) Webinar Oct 2017
pcm32/ProtClusterer
A set of R S4 object to classify proteins through clustering based on different types of annotations/features/data.
pcm32/proteinSetReport
An R package to automate report making
pcm32/PubChemScreens
Retrieve small molecules screens from PubChem and produce statistics for compound selections.
pcm32/pykube
Python client library for Kubernetes
pcm32/Reactome.Analysis.REST
A web service client for the Reactome Analysis REST service.
pcm32/registry-cli
Scripts for easy manipulation of docker-registry from command line (and from scripts)
pcm32/tsi_kubespray
Kubespray App for EBI Cloud Portal
pcm32/woods-variation-wrappers