Synergistic Discovery and Design

Pinned Repositories

api-user-guide
Docs for SD2E core platform and additional integrated web service APIs
Language:Ruby3 12 42
experimental-intent-parser
A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.
Language:Python4 8 2840
jenkins-integration
For coordinating/demonstrating Jenkins-based data CI
Language:Python2 16 01
omics_tools
Mirror of SD2E omics_tools
Language:Python2 8 00
opil
The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces
Language:Python5 8 1381
reactors-etl
Source code and test material for developing ETL components for use in SD2E
Language:Shell3 13 43
redash
Connect to any data source, easily visualize, dashboard and share data
Language:Python1 8 00
sbol-dictionary-maintainer
Synchronize lists of key reagents, constructs, strains, etc. between a Google Sheets dictionary and SynBioHub
Language:Java5 8 293
sbol-dictionary-writer
API for writing to lists of key reagents, constructs, strains, etc. jointly maintained between a Google Sheets dictionary and SynBioHub
Language:Python2 7 10
SYNBICT
Synthetic Biology Curation Tools
Language:Python6 10 482

Synergistic Discovery and Design's Repositories

SD2E/SYNBICT
Synthetic Biology Curation Tools
Language:Python6 10 482
SD2E/opil
The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces
Language:Python5 8 1381
SD2E/experimental-intent-parser
A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.
Language:Python4 8 2840
SD2E/omics_tools
Mirror of SD2E omics_tools
Language:Python2 8 00
SD2E/base-images
Consolidated repository for building and improving SD2E's various Docker base images
Language:Python1 9 40
SD2E/build_request_parser
Language:Python1 7 0
SD2E/CDM
Mirror of SD2E CDM
Language:Jupyter Notebook1 8 00
SD2E/jupyteruser-sd2e
Dockerfile (and build/test support) for extending SD2E Jupyter Notebooks base image
Language:Jupyter Notebook1 10 214
SD2E/precomputed-data-table
Language:Jupyter Notebook1 7 00
SD2E/sd2e-cli
Command line interface for SD2E-tailored version of TACC Cloud API
Language:Shell1 4 183
SD2E/synbiohub_adapter
Language:Python1 12 532
SD2E/xplan
Language:Jupyter Notebook1 7 0
SD2E/experimental-intent-parser-mw
Language:Python0 7 00
SD2E/python-datacatalog
(Mirror) Python package containing core business logic and helper utilities for Data Catalog
Language:Python0 9 00
SD2E/rna-seq-pipeline
This is the automated RNA-seq processing pipeline used by the SD2 program
Language:Python0 8 01
SD2E/test-harness
GitHub mirror of https://gitlab.sd2e.org/sd2program/test-harness
Language:Python0 2 11
SD2E/app-genomics-pipeline
Language:Shell8 0
SD2E/app-proteowizard
Language:Shell8 0
SD2E/app-sipros
Language:Shell8 0
SD2E/app-thermorawfileparser
Language:Shell8 0
SD2E/bacanora
Accelerated, tenacious versions of key Agave operations
Language:Python6 21
SD2E/cp-request-api
A Python package for structured experimental (aka, challenge problem) requests
Language:Python2 0
SD2E/diagnose
Language:Python7 0
SD2E/OPIL-specification
Open Protocol Interface Language (OPIL) specification document
Language:TeX7 31
SD2E/performance-metrics
Language:Python7 0
SD2E/pipelinejobs-indexer
(Mirror) Indexes outputs from a PipelineJob so they are discoverable in the Data Catalog
Language:Python7 0
SD2E/pipelinejobs-manager
(Mirror) Manages creation and management of, as well as updates to, Pipelines system jobs.
Language:Python7 0
SD2E/pysd2cat
Python SD2 Circuit Analysis Tool
Language:Jupyter Notebook7 0
SD2E/rsync-work-app
Tapis app that uses rsync on a personal executionSystem to migrate your /work directory to /work2
Language:Shell8 0
SD2E/sbh-metrics
Metrics gleaned from SynBioHub
Language:Python8 0