Pinned Repositories
api-user-guide
Docs for SD2E core platform and additional integrated web service APIs
experimental-intent-parser
A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.
jenkins-integration
For coordinating/demonstrating Jenkins-based data CI
omics_tools
Mirror of SD2E omics_tools
opil
The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces
reactors-etl
Source code and test material for developing ETL components for use in SD2E
redash
Connect to any data source, easily visualize, dashboard and share data
sbol-dictionary-maintainer
Synchronize lists of key reagents, constructs, strains, etc. between a Google Sheets dictionary and SynBioHub
sbol-dictionary-writer
API for writing to lists of key reagents, constructs, strains, etc. jointly maintained between a Google Sheets dictionary and SynBioHub
SYNBICT
Synthetic Biology Curation Tools
Synergistic Discovery and Design's Repositories
SD2E/apply-recursive-pems-reactor
Applies permissions recursively. More reliable that the baseline Agave files recursive flag.
SD2E/contain_yourself
Convenience wrapper around Singularity exec and Compute-oriented Docker run
SD2E/heuristomancer
SD2E/jupyter-ascendant
Application code for launching Jupyter @ TACC HPC integrated with SD2E environment
SD2E/Q0-etl-coordinate
Coordination and management of Q0 ETL Sprint
SD2E/sd2ify
Chrome extension to simplify sharing links within the SD2 program.
SD2E/sd2nb-app
Simple application for sharing notebooks within the SD2E Jupyter Environment
SD2E/templates
App Templates used by Portainer
SD2E/fcs-etl-application
Flow cytometry ETL application.
SD2E/fcs-etl-reactor
Reactor that processes data and config files and launches fcs-etl-application
SD2E/fcs-etl-reactor-example
Example configuration and data files for fcs-etl-reactor.
SD2E/demo-mailbot-reactor
Demo Mailbot using Q22018 reactors module
SD2E/dnaseq-etl-application
App that will house the dnaseq etl process.
SD2E/lcms-pyquant-application
SD2E/libsbol-docker
SD2E/platereader-etl-specs
Specification for plate reader ETL metadata
SD2E/portal-app-tray-mgr
For managing the SD2E Discovery Workspace app catalog
SD2E/requestbin
Inspect HTTP requests. Debug webhooks. Originally created by @progrium.
SD2E/rnaseq-application
SD2E/rnaseq-broad-application
SD2E/ta3-scripts
A home for shared TA3 scripts mostly for data transfer. Expected to be orphaned when data transfer is finalized.
SD2E/validate-manifest-reactor
Validate an SD2E manifest uploaded to a TACC S3 endpoint