Pinned Repositories
2016TargetingAnalysis
Used to perform targeting analysis for "Transcriptome profiling of the developing male germ line identifies the miR‑29 family as a global regulator during meiosis" by Stephanie Hilz, Elizabeth A. Fogarty, Andrew J. Modzelewski, Paula E. Cohen and Andrew Grimson.
2018-03-10-UCSF-R
2019-03-08-UCSF-Python
swc at ucsf on 3/8/2019
3DGliomaAnalysis
All tidy data, analyses, and output for Hilz et al. 3D Glioma Atlas manuscript.
exomeAdvancedVariantFiltering
A post-mutation calling pipeline for additional variant filtering.
exomeQualityPlots
Scripts to generate plots of exome library and mutation calling quality stats.
facets
Scripts to run FACETS (https://github.com/mskcc/facets) on Costello lab exome data.
GliomaAtlas3D
A Shiny web app for visualizing genomic data from brain tumors in 3D.
miRsift
Sifting through high-throughput sequencing data to identify miRNAs with a regulatory impact.
ModOfKerInf_RNAseqAnalysis
Differential expression analysis for a study investigating the modulation of inflammation in keratinocytes
SRHilz's Repositories
SRHilz/GliomaAtlas3D
A Shiny web app for visualizing genomic data from brain tumors in 3D.
SRHilz/exomeQualityPlots
Scripts to generate plots of exome library and mutation calling quality stats.
SRHilz/miRsift
Sifting through high-throughput sequencing data to identify miRNAs with a regulatory impact.
SRHilz/3DGliomaAnalysis
All tidy data, analyses, and output for Hilz et al. 3D Glioma Atlas manuscript.
SRHilz/ModOfKerInf_RNAseqAnalysis
Differential expression analysis for a study investigating the modulation of inflammation in keratinocytes
SRHilz/2016TargetingAnalysis
Used to perform targeting analysis for "Transcriptome profiling of the developing male germ line identifies the miR‑29 family as a global regulator during meiosis" by Stephanie Hilz, Elizabeth A. Fogarty, Andrew J. Modzelewski, Paula E. Cohen and Andrew Grimson.
SRHilz/2018-03-10-UCSF-R
SRHilz/2019-03-08-UCSF-Python
swc at ucsf on 3/8/2019
SRHilz/exomeAdvancedVariantFiltering
A post-mutation calling pipeline for additional variant filtering.
SRHilz/facets
Scripts to run FACETS (https://github.com/mskcc/facets) on Costello lab exome data.
SRHilz/2019-09-27-UCSF-Python
UCSF SWC 2019/09/27 Python
SRHilz/3DGliomaAtlas
SRHilz/AdvImgMetricsSurvival
SRHilz/Costello-PSCN-Seq
SRHilz/planets
SRHilz/SCO
SRHilz/SeqAnalysisCode
SRHilz/workshop-template
Rendering of the workshop-template site