SWC-Advanced-Microscopy/measurePSF

Issues

• Add a URL to the repo in each saved image

  #45 opened 5 years ago by raacampbell
  0

• recordPSF should only run with one channel enabled for saving

  #57 opened 4 months ago by raacampbell
  1

• ScanImage state not returned to previous settings after running lens paper

  #61 opened 2 years ago by raacampbell
  1

• Need to copy microscope settings files to data directories

  #72 opened 4 months ago by raacampbell
  1

• Create variable input prompts in record.PSF

  #68 opened 4 months ago by iwhiteley
  2

• Failing to find `snakeyaml` in this repo so can't load settings

  #71 opened 4 months ago by raacampbell
  1

• Disable bidi for PSFs?

  #73 opened 4 months ago by raacampbell
  0

• Can standard light source data go into one file?

  #67 opened 5 months ago by raacampbell
  1

• Make a function that images a pollen grain and moves it to check stages

  #23 opened 5 years ago by raacampbell
  1

• Output stats from plot/analysis functions

  #66 opened 6 months ago by raacampbell
  0

• electrical noise should only turn off existing PMTs

  #60 opened 6 months ago by raacampbell
  1

• Axial PSF isn't calculated along the axis of the PSF

  #41 opened 5 years ago by raacampbell
  0

• Contour plot of fluorescent slide

  #50 opened 5 years ago by raacampbell
  0

• Are we plotting var or SD in gain plots?

  #64 opened a year ago by raacampbell
  1

• Make sure the report generation works as expected and update the readme to describe it

  #65 opened a year ago by raacampbell
  0

• Consider getting rid of the requirement for the image processing toolbox

  #63 opened 2 years ago by raacampbell
  0

• recordPSF fails if PC username contains a hyphen

  #47 opened 5 years ago by raacampbell
  1

• get rid of parallel computing requirement in load 2D tiff

  #62 opened a year ago by raacampbell
  1

• recordPSF fails to work with ScanImage Basic 2021

  #59 opened 3 years ago by raacampbell
  0

• Grid measure tool does not pull in average image

  #58 opened 3 years ago by raacampbell
  1

• Polish labels in measurePSF

  #56 opened 5 years ago by raacampbell
  0

• Labels missing or need modifying in measurePSF

  #52 opened 5 years ago by raacampbell
  6

• Axis numbers along the ZY and ZX plots seem wrong

  #54 opened 5 years ago by raacampbell
  1

• Add option to use slow-z device to recordPSF

  #55 opened 5 years ago by raacampbell
  0

• Add a 1 micron X/Y scale bar with a label

  #53 opened 5 years ago by raacampbell
  0

• fname not made correctly in measurePSF.m

  #48 opened 5 years ago by raacampbell
  3

• recordPSF save date is not correct

  #49 opened 5 years ago by raacampbell
  1

• Label axes in grid plot

  #51 opened 5 years ago by raacampbell
  0

• Label the plots more clearly in measurePSF

  #42 opened 5 years ago by raacampbell
  1

• Add legends to measurePSF

  #43 opened 5 years ago by raacampbell
  1

• grid GUI should have a ‘save figure’ button to save pdf of output

  #33 opened 5 years ago by raacampbell
  1

• Option to set main SI window to have look-up table be jet(10)

  #37 opened 5 years ago by raacampbell
  1

• Ensure recordPSF works with coarse Z

  #39 opened 5 years ago by raacampbell
  3

• Confirm that grid measurement is only needed at one zoom value

  #40 opened 5 years ago by raacampbell
  1

• apply FOV in grid GUI failed on Fred's reso rig

  #34 opened 5 years ago by raacampbell
  1

• Ensure pixels in XY and YZ projections are square

  #44 opened 5 years ago by raacampbell
  1

• In R2019b the top right plot does not expand when the user zooms

  #46 opened 5 years ago by raacampbell
  1

• measurePSF lacks x/y FWHM in some circumstances

  #38 opened 5 years ago by raacampbell
  1

• recordPSF saved file name date and time are wrong

  #32 opened 5 years ago by raacampbell
  1

• measurePSF would be nice if it could also take stack into fluorcal slide

  #36 opened 5 years ago by raacampbell
  0

• grid GUI image top right is not autoscaled nicely

  #35 opened 5 years ago by raacampbell
  0

• Slider motion is quite laggy in measurePSF

  #27 opened 5 years ago by raacampbell
  1

• Should be able to run measurePSF without input args

  #30 opened 5 years ago by raacampbell
  1

• Add scrolling plot of mean intensity

  #24 opened 5 years ago by raacampbell
  2

• Graphically provide input options to Grid2MicsPerPixel

  #31 opened 5 years ago by raacampbell
  1

• Add to Grid measurement window options pull new grid image and set FOV

  #28 opened 5 years ago by raacampbell
  2

• Function to alter a scan axis to achieve a square grid

  #29 opened 5 years ago by raacampbell
  0

• Have a command that sets FOV in ScanImage (assuming square grid)

  #22 opened 5 years ago by raacampbell
  1

• measurePSF should take a file name as an input

  #26 opened 5 years ago by raacampbell
  1

• Why do NeuroVision--imaged beads not measure with the tool?

  #25 opened 5 years ago by raacampbell
  1