SahakyanLab
Integrative Computational Biology and Machine Learning Laboratory, University of Oxford
Oxford
Pinned Repositories
DNAFragility_dev
Research and development code for DNA breakpoints induced under various conditions.
DNAFragility_ML
Development and application of DNA fragility prediction engine based only on sequence-context.
DNAkmerQM
A database of electronic, topological, and QM-derived features calculated for DNA k-mers.
G4Damage
Pipeline for cross mapping DNA damage with regard to G-quadruplex structures.
GenomicContactDynamics
Code for the analyses and simulations involved in the Genomic Contact Dynamics research.
GenomicPR2SimsWebApp
Shiny interface and simple ODE-based simulation code for the genomic base composition.
iMotif_dev
Data and scripts for iMotif stability predictions in a restricted C/T space of possible sequences.
kmeRtone
Multi-purpose and transferrable k-meric enrichment/depletion analysis software.
NucleicAcidsQM
Research and development code for QM calculations on nucleic acids.
ROptimus
ROptimus: a parallel general purpose adaptive optimisation engine
SahakyanLab's Repositories
SahakyanLab/ROptimus
ROptimus: a parallel general purpose adaptive optimisation engine
SahakyanLab/DNAFragility_dev
Research and development code for DNA breakpoints induced under various conditions.
SahakyanLab/DNAFragility_ML
Development and application of DNA fragility prediction engine based only on sequence-context.
SahakyanLab/DNAfrAIlib
DNA fragility associated k-meric features for genomic sequence-driven machine learning.
SahakyanLab/DNAkmerQM
A database of electronic, topological, and QM-derived features calculated for DNA k-mers.
SahakyanLab/G4Damage
Pipeline for cross mapping DNA damage with regard to G-quadruplex structures.
SahakyanLab/GenomicContactDynamics
Code for the analyses and simulations involved in the Genomic Contact Dynamics research.
SahakyanLab/GenomicPR2SimsWebApp
Shiny interface and simple ODE-based simulation code for the genomic base composition.
SahakyanLab/GenomicPR2Simulations
Pipeline for ODE-driven simulations to explore the genomic compliance of PR-2.
SahakyanLab/iMotif_dev
Data and scripts for iMotif stability predictions in a restricted C/T space of possible sequences.
SahakyanLab/kmeRtone
Multi-purpose and transferrable k-meric enrichment/depletion analysis software.
SahakyanLab/NucleicAcidsQM
Research and development code for QM calculations on nucleic acids.