Pinned Repositories
hypergate
citrus
Citrus Development Code
flowCore
Core flow cytometry infrastructure
cellGrowth
explorations
Methods exploration and review
GenratorFCSkit
mev-prep
Pre-processing and analysis of cytometry data
ropls
cytometree
A binary tree algorithm for automatic gating in cytometry analysis
FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
SamGG's Repositories
SamGG/made4
SamGG/made4_old
made4 package from Bioconductor
SamGG/baySeq
SamGG/clusterSeq
SamGG/cytoElements
SamGG/deploy_analyticyte
SamGG/DIAgui
An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)
SamGG/diffcyt
R package for differential discovery analyses in high-dimensional cytometry data
SamGG/diffcyt_dev
SamGG/flowCore
Core flow cytometry infrastructure
SamGG/FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
SamGG/kohonen
Supervised and unsupervised self-organising maps
SamGG/LAMBDA
An R package of model based clustering for flow and mass cytometry data
SamGG/LP3_shiny
SamGG/m2_bmrk
SamGG/MALDIquant
Quantitative Analysis of Mass Spectrometry Data
SamGG/MSProfileR-test
SamGG/ppsr
R implementation of Predictive Power Score
SamGG/RANN
R package providing fast nearest neighbour search (wraps ANN library)
SamGG/RAPID
Risk Assessment Population and Identification
SamGG/rcpphnsw
Rcpp bindings for the approximate nearest neighbors library hnswlib
SamGG/rgexf
Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others) in R.
SamGG/riboSeqR
SamGG/rigraph
igraph R package
SamGG/Rtsne
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding
SamGG/segmentSeq
SamGG/Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
SamGG/T-REX
SamGG/thoughts
SamGG/What-I-cannot-create-I-do-not-understand
I fully agree with this quote from Richard Feynman. This precept has helped me better understand the limitations of many methods. Here are some of them.