SaminRK/MuSeAM

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* Multinomial Convolutions for Joint Modeling of Regulatory Motifs and Sequence Activity Readouts *
We propose to learn convolutions as multinomial distributions, thus streamlining interpretable motif discovery with CNN model fitting.
This paper is published at MDPI genes (https://www.mdpi.com/2073-4425/13/9/1614)

Getting Started

To get a local copy up and running follow these simple steps.

Usage

Install conda environment

conda env create -f environment.yml
conda activate museam

How to run the code

Running model on default (liver enhancer) data.

python train.py -t regression

License

Distributed under the MIT License. See LICENSE for more information.

Contact

Minjun Park: minjunp3@gmail.com