R Shiny application for the vizualiation of data presented in the paper Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data (https://peerj.com/articles/9688/) .
R code written by Sandro Valenzuela.
To run this graph, simply download the R scripts in this folder as well as data and modules. Make sure R is installed on your machine (https://www.r-project.org/). For a slick R dev interface, we recommend using Rstudio (https://www.rstudio.com/)
Before attempting to run the app, make sure that the following required packages are installed:
- shiny
- shinythemes
- stringr
- ggplot2
- reshape2
- phyloseq
- plyr
The Phyloseq package should be downloaded from bioconductor following the instructions given at: https://bioconductor.org/packages/release/bioc/html/phyloseq.html.
All other packages can be downloaded using the R command: install.packages(nameofthepackage)