Pinned Repositories
inStrain
Bioinformatics program inStrain
GRiD
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
16s18sits
16S pipeline based on dada2 including analysis and reports
extractSeq
Giving a contig name and positions (start and end), extractSeq can return the corresponding sequence from your fasta.
getS2
getS2 calculate the order parameter for your protein (or range of residues), and you'll get a file like a format "reside value"
GGisy
Genome-Genome circle synteny
HumanMicrobiomeAnalysis
R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data
multiGenomicContext
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
UHGV
Unified Human Gut Virome Catalog
MetaBinner
Sanrrone's Repositories
Sanrrone/GGisy
Genome-Genome circle synteny
Sanrrone/multiGenomicContext
multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
Sanrrone/extractSeq
Giving a contig name and positions (start and end), extractSeq can return the corresponding sequence from your fasta.
Sanrrone/getS2
getS2 calculate the order parameter for your protein (or range of residues), and you'll get a file like a format "reside value"
Sanrrone/16s18sits
16S pipeline based on dada2 including analysis and reports
Sanrrone/HumanMicrobiomeAnalysis
R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data