ziyewang/MetaBinner

Issues

• What is the final output file? Where are the final bins located?

  #42 opened 2 months ago by winatony
  1

• Multiple errors while running MetaBinner on the tests data provided in this Github page

  #41 opened 3 months ago by Gayathri-Guduru
  0

• how to bin the contigs from different samples

  #37 opened 8 months ago by jiangyoufeng
  1

• Dependancies outdated?

  #40 opened 5 months ago by ntorres17
  0

• Source code installation - Version

  #39 opened 5 months ago by Georgios-Filis
  0

• markerCMD failed

  #38 opened 6 months ago by lxsteiner
  1

• run_FragGeneScan.pl error - Hmmsearch failed

  #36 opened 9 months ago by Georgios-Filis
  2

• A bug in gen_kmer.py

  #35 opened 10 months ago by quliping
  3

• Differences between SolidBin and MetaBinner

  #34 opened 10 months ago by quliping
  2

• SafetyError - Incorrect size

  #28 opened 10 months ago by Georgios-Filis
  1

• How to set the tmp dir of metabinner?

  #33 opened a year ago by quliping
  2

• no pplacer available for mac os

  #32 opened a year ago by mikeds211
  1

• Input contains NaN, infinity or a value too large for dtype('float64') in Component Binning Step

  #31 opened a year ago by adityabandla
  1

• Input file does not exists

  #30 opened a year ago by Sanrrone
  4

• custom temporary path is needed

  #29 opened a year ago by Sanrrone
  2

• make gen_coverage_file accept compressed files

  #27 opened a year ago by Sanrrone
  2

• A detail description of the final output

  #21 opened a year ago by daisykuma22
  3

• error in subscript of component_binning.py

  #25 opened a year ago by Xchenkai2019
  4

• Something went wrong with running split_hhbins.py.

  #24 opened a year ago by Georgios-Filis
  3

• Work in eukaryotic organisms？

  #26 opened a year ago by Xchenkai2019
  1

• component_binning.py error

  #11 opened 3 years ago by kikinocka
  5

• Add indication about absolute paths requirement for run_metabinner.sh

  #16 opened 3 years ago by michoug
  3

• Final bin directory?

  #23 opened 2 years ago by Iamcluless
  2

• error in component_binning.py

  #22 opened 2 years ago by heleeno
  3

• Error running bin command

  #8 opened 3 years ago by rgtaketani
  2

• Two bugs to fix for preparing data

  #20 opened 2 years ago by Hocnonsense
  2

• Binning finishes successfully but with errors

  #9 opened 2 years ago by Chrisjrt
  6

• Run metabinner with designated BAM

  #17 opened 2 years ago by CongLiu37
  1

• something wrong in the script - Filter_tooshort.py

  #19 opened 2 years ago by B-1991-ing
  2

• Warning message in log files

  #18 opened 3 years ago by B-1991-ing
  2

• Unable to allocate XX GiB for an array with shape (XX, XX) error

  #12 opened 3 years ago by michoug
  3

• Question with the metabinner_result.tsv

  #15 opened 3 years ago by B-1991-ing
  5

• Fastq naming issue

  #14 opened 3 years ago by susheelbhanu
  2

• Feature request: Use `sample name` in `gen_kmer.py` output

  #13 opened 3 years ago by susheelbhanu
  2

• Exit with error when run MetaBinner

  #10 opened 3 years ago by dawnmy
  2

• Replace FragGeneScan?

  #5 opened 3 years ago by sjaenick
  1

• Unnecessary requirements in installation. Remove and publish to conda?

  #4 opened 3 years ago by dkoslicki
  6

• Update ETA

  #3 opened 3 years ago by GeoMicroSoares
  2

• Got error: out of bounds for axis 0 while running Metabinner.py

  #2 opened 5 years ago by dawnmy
  6

• missing minimap2, samtools, bedtools in yaml

  #1 opened 5 years ago by dawnmy
  1