SaradhaVenkatachalapathy
PhD student using quantitative image analysis and NGS data to understand cell biology
NUS,PSISwitzerland
Pinned Repositories
chrometrics
Nuclear Morphology and Chromatin Organization Features
annotate_images
Interactively generate/edit segmentation labels using napari
Cell_Shape_Compressive_Force_MBoC_2018
Analysis used in Damodaran et.al, Molecular Biology of the Cell , 2018
Cell_Shape_TNF_alpha_PNAS_2017
Analysis in the paper Mitra et.al. PNAS 2017.
Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels
Analysis performed for the Belyaeva et.al PNAS 2017 Paper
colony-image-analysis
COVID19-Infections-Interactive-visualization
Interactive Visualization of coronavirus Covid-19 Infection
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
imagej
:sparkler: Open scientific N-dimensional image processing :microscope:
Radial_chromatin_packing_immune_cells
SaradhaVenkatachalapathy's Repositories
SaradhaVenkatachalapathy/Radial_chromatin_packing_immune_cells
SaradhaVenkatachalapathy/annotate_images
Interactively generate/edit segmentation labels using napari
SaradhaVenkatachalapathy/Cell_Shape_Compressive_Force_MBoC_2018
Analysis used in Damodaran et.al, Molecular Biology of the Cell , 2018
SaradhaVenkatachalapathy/Cell_Shape_TNF_alpha_PNAS_2017
Analysis in the paper Mitra et.al. PNAS 2017.
SaradhaVenkatachalapathy/Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels
Analysis performed for the Belyaeva et.al PNAS 2017 Paper
SaradhaVenkatachalapathy/colony-image-analysis
SaradhaVenkatachalapathy/COVID19-Infections-Interactive-visualization
Interactive Visualization of coronavirus Covid-19 Infection
SaradhaVenkatachalapathy/hic
Analysis of Chromosome Conformation Capture data (Hi-C)
SaradhaVenkatachalapathy/imagej
:sparkler: Open scientific N-dimensional image processing :microscope:
SaradhaVenkatachalapathy/Latterally_confined_growth_stem_cell_engineering_PNAS_2018
Transcriptome Analysis performed for the Roy et.al PNAS 2018 Paper
SaradhaVenkatachalapathy/Multivariate_analysis_cancer-activation-primed-geometries
Multivariate analysis reveals activation-primed fibroblast geometric states in engineered 3D tumor microenvironments (Paper)
SaradhaVenkatachalapathy/NMCO-Image-Features
Nuclear Morphology and Chromatin Organization Features
SaradhaVenkatachalapathy/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
SaradhaVenkatachalapathy/SaradhaVenkatachalapathy.github.io
My personal website adapted from mmistakes/minimal-mistakes