ScalableCytometryImageProcessing/SCIP

Focus selection or focus stacking for multi-focal images

MaximLippeveld opened this issue · 0 comments

The CZI images have a Z-dimension. The planes in the Z-dimension have to be converted into one plane. This can be done by selecting one plane, either fixed in config or dynamically using a focus metric. Another option is to fuse the planes with focus stacking.

  • Selecting a fixed plane with a config entry
  • Dynamically selecting a plane per instance using a focus metric
  • Fusing the stack with focus stacking